Gene
| Gene Model ID | pfu_aug1.0_547.1_00385 |
|---|---|
| Locus | scaffold547.1 : 149176 ... 156938 : + |
| To GenomeBrowser | scaffold547.1:149176..156938 |
| Genes list of scaffold | scaffold547.1 |
| Synonym | pfu_aug2.0_360.1_00652 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_547.1_00385.t1 | 3 | 1 | zf-C2H2 | 102 | 124 | 3.5e-13 | 49.0 | 1.0e-05 | 0.011 | 15.9 |
| pfu_aug1.0_547.1_00385.t1 | 3 | 1 | zf-C2H2_4 | 102 | 124 | 7.8e-09 | 35.2 | 0.00073 | 0.84 | 10.1 |
| pfu_aug1.0_547.1_00385.t1 | 3 | 1 | zf-C2H2_6 | 102 | 121 | 1.8e-06 | 27.6 | 2.8e-05 | 0.032 | 14.1 |
| pfu_aug1.0_547.1_00385.t1 | 3 | 2 | zf-C2H2 | 159 | 181 | 3.5e-13 | 49.0 | 2.4e-07 | 0.00028 | 21.0 |
| pfu_aug1.0_547.1_00385.t1 | 3 | 2 | zf-C2H2_4 | 159 | 181 | 7.8e-09 | 35.2 | 0.00013 | 0.15 | 12.4 |
| pfu_aug1.0_547.1_00385.t1 | 3 | 2 | zf-C2H2_6 | 159 | 174 | 1.8e-06 | 27.6 | 0.0057 | 6.5 | 6.8 |
| pfu_aug1.0_547.1_00385.t1 | 3 | 3 | zf-C2H2 | 185 | 207 | 3.5e-13 | 49.0 | 6.3e-08 | 7.2e-05 | 22.8 |
| pfu_aug1.0_547.1_00385.t1 | 3 | 3 | zf-C2H2_4 | 185 | 207 | 7.8e-09 | 35.2 | 1.8e-07 | 0.00021 | 21.4 |
| pfu_aug1.0_547.1_00385.t1 | 3 | 3 | zf-C2H2_6 | 185 | 207 | 1.8e-06 | 27.6 | 4.6e-05 | 0.052 | 13.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_547.1_00385.t1 | gi|348541429|ref|XP_003458189.1| | 5.0e-11 |
Transcript
| Transcript ID | pfu_aug1.0_547.1_00385.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_547.1_00385.t1 atgacatcacagggtgtaaatgtagttgacgtgacacagatgtcccccacctttatggggcctctctatcccaggccaat cctctttccacgtcccacacccccacaactccagctctaccatcccagggttccgctgccgtcatcagaatcagagagtc ctgcactgcaatcaccagagcaaggcaaatctctgaaaggcgatttgactcagaagcactctagtcctagtctagacatt gtaagccagtcactacaagctgccgaattgcctagtcctgtagatatatccccatctgacccttattcttgcccaatatg taaacaacgctatggctcatcacaagcattgttacttcatatgatgcttcatgaccatgtacagaaccccactcctacag tgaagaaaagtagaaaatctcacaccccgcaaaagaaagagaaaattgttattgaggaagattcgaatggaagtttttca tgtgaaacatgcggtaaaagtttcaaggatgcccagtccttgaaatttcatcgttacaaccatgttctacgacacccttg caatatatgtggaaagcgttttagcagatgttggaatttgcagagacataaaaagtctcattttaagatgggaaattggc cttcagcatcgttaggtgctccgtatcaagagggaaaagacatagaaaacatggaggagggaatggataacccaggagaa gatgaagatgtatcggtagaagctctagatctgagggacggtgataggagtcgggagaatgtaagtcctaaggacaatga taccgatgtgccggcacataaagctggtctgtaa |
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Protein
| Protein ID | pfu_aug1.0_547.1_00385.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_547.1_00385.t1 MTSQGVNVVDVTQMSPTFMGPLYPRPILFPRPTPPQLQLYHPRVPLPSSESESPALQSPEQGKSLKGDLTQKHSSPSLDI VSQSLQAAELPSPVDISPSDPYSCPICKQRYGSSQALLLHMMLHDHVQNPTPTVKKSRKSHTPQKKEKIVIEEDSNGSFS CETCGKSFKDAQSLKFHRYNHVLRHPCNICGKRFSRCWNLQRHKKSHFKMGNWPSASLGAPYQEGKDIENMEEGMDNPGE DEDVSVEALDLRDGDRSRENVSPKDNDTDVPAHKAGL |
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