Gene
| Gene Model ID | pfu_aug1.0_55.1_29041 |
|---|---|
| Locus | scaffold55.1 : 149357 ... 158345 : - |
| To GenomeBrowser | scaffold55.1:149357..158345 |
| Genes list of scaffold | scaffold55.1 |
| Synonym | pfu_aug2.0_490.1_00814 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_55.1_29041.t1 | 3 | 1 | CTDII | 31 | 51 | 9.3e-26 | 89.5 | 0.019 | 140.0 | 2.4 |
| pfu_aug1.0_55.1_29041.t1 | 3 | 2 | CTDII | 102 | 142 | 9.3e-26 | 89.5 | 0.00043 | 3.2 | 7.7 |
| pfu_aug1.0_55.1_29041.t1 | 3 | 3 | CTDII | 155 | 235 | 9.3e-26 | 89.5 | 1.5e-25 | 1.1e-21 | 76.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_55.1_29041.t1 | gi|115610690|ref|XP_793217.2| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_55.1_29041.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_55.1_29041.t1 atgagtggtgacccattctcaagcttctttggagattttggattttttggtggtggaagagaagaaagtagagagattcc gagaggtggcgatatcgttatggatttagatgtaacgttagaagaactttactcaggaaattttgttgaggtattgcggt ataaaccggtggctaagccagctaggggtacaaggaaatgtaattgtagaacagagatggtgacgcagcaactcggcccc ggcagatttcagatgacgcaacagcaagtctgtgatgattgtcctaacgtcaaaatggtacctgaagaaaaattactaga gatagagatagagcctggaatgagggacggacaggaatatccgtttgtagccgagggagagcctcatattgacggagaac cgggtgatttaagattcaaaattaaacaacaaaaacataggaaatttgagcgaaggggagatgacctatataccaatgtt accatcacactacaagacgcgctgtctggatttgaaatggacatcaaacatttagatggtcatttggtccatgtagttcg agataaaataacttggcctggtgccaggatgagaaaagccggggagggaatgccgaattatgagaataataacgtcagag gacagctatttataacttttgatatagaatttccaaaaggaactttaacagaagaagaaaaagaagaaatagcaaaggtt ttaaaacaagattcaaagcaagttgtttacaacggacttcaatccagattttttgcatga |
|
Protein
| Protein ID | pfu_aug1.0_55.1_29041.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_55.1_29041.t1 MSGDPFSSFFGDFGFFGGGREESREIPRGGDIVMDLDVTLEELYSGNFVEVLRYKPVAKPARGTRKCNCRTEMVTQQLGP GRFQMTQQQVCDDCPNVKMVPEEKLLEIEIEPGMRDGQEYPFVAEGEPHIDGEPGDLRFKIKQQKHRKFERRGDDLYTNV TITLQDALSGFEMDIKHLDGHLVHVVRDKITWPGARMRKAGEGMPNYENNNVRGQLFITFDIEFPKGTLTEEEKEEIAKV LKQDSKQVVYNGLQSRFFA |
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