Gene
| Gene Model ID | pfu_aug1.0_55.1_29042 |
|---|---|
| Locus | scaffold55.1 : 162656 ... 183404 : + |
| To GenomeBrowser | scaffold55.1:162656..183404 |
| Genes list of scaffold | scaffold55.1 |
| Synonym | pfu_aug2.0_490.1_00815 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_55.1_29042.t1 | 3 | 1 | MCRS_N | 61 | 73 | 0.0 | 214.9 | 0.2 | 2900.0 | -2.5 |
| pfu_aug1.0_55.1_29042.t1 | 3 | 2 | MCRS_N | 152 | 209 | 0.0 | 214.9 | 7.2e-30 | 1.1e-25 | 90.3 |
| pfu_aug1.0_55.1_29042.t1 | 3 | 3 | MCRS_N | 223 | 332 | 0.0 | 214.9 | 8.80015e-42 | 1.3e-37 | 129.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_55.1_29042.t1 | gi|327276962|ref|XP_003223235.1| | PREDICTED: microspherule protein 1 [Anolis carolinensis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_55.1_29042.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_55.1_29042.t1 atgtcgtcaatggagcagtctcttaaacaagacgctacacagacgacaaagtctgacacaagccttgtgaggaccaatca gattactacaacgaaatcggtaccaacactaacgtttccctcgtctagccttcataatgttacaggtcagctaagtagcg aagcggctaaaagtttagcacaaagtgtggagagacgctcacggagagaaataaaacggaagaaatttgatgatgaagta gtggaaagcagtctgcttaagacagaaacgcggaaagtgagacctccgccacttcctggtcaacaagaaaaaccagagag tgtagaaaaagaggctccgctaatcccccctccagaaaaaaagaagtctggtaaaaatgctgctgcagcaaaaagggcaa agaagcaaaaagttggtcaaccaccagcacctgcatcaacaaaggatttaggacgatggaaagctcaggatgacatagct ctgattacagctgtacaacagaccaatgatctgacagcagtacatcaaggtgttaagttttcctgtcatttcactctgaa ggagatccaagagagatggtatgccctactttacgatccaatcctgtctaaatatcagatcaaacatccaaagtttaaat tgttcacttttgcaaacaacctattacatactagtcagccaaatgtgtccgtgttccaagacttgttagattccaatcct gagaagttttacccgttacgctcggctaaagcgttacacactcattggttattgatgaaacagtatcatttgttacccga ccaatcagtgcagcccattccgaggggagaccacgtccttaatttctcagatgctgaggatatgcagaatgatgaagata tcaaagatggaaaagaggacatacttgagcaagagctgacagttgctgataggagaaataaacgtgagattcgccatctg gagcaggagttaccgaagtggcaggtgcttgttgacagtgttactggtatcagtccgccagattttgacaatcagacgct ggctgtgttaagaggaaggctggtgcgctatctgatgaggtctagagagtcccctaccggcaacgccgaaggggactctt ag |
|
Protein
| Protein ID | pfu_aug1.0_55.1_29042.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_55.1_29042.t1 MSSMEQSLKQDATQTTKSDTSLVRTNQITTTKSVPTLTFPSSSLHNVTGQLSSEAAKSLAQSVERRSRREIKRKKFDDEV VESSLLKTETRKVRPPPLPGQQEKPESVEKEAPLIPPPEKKKSGKNAAAAKRAKKQKVGQPPAPASTKDLGRWKAQDDIA LITAVQQTNDLTAVHQGVKFSCHFTLKEIQERWYALLYDPILSKYQIKHPKFKLFTFANNLLHTSQPNVSVFQDLLDSNP EKFYPLRSAKALHTHWLLMKQYHLLPDQSVQPIPRGDHVLNFSDAEDMQNDEDIKDGKEDILEQELTVADRRNKREIRHL EQELPKWQVLVDSVTGISPPDFDNQTLAVLRGRLVRYLMRSRESPTGNAEGDS |
|