Gene
| Gene Model ID | pfu_aug1.0_5522.1_67267 |
|---|---|
| Locus | scaffold5522.1 : 6075 ... 32965 : - |
| To GenomeBrowser | scaffold5522.1:6075..32965 |
| Genes list of scaffold | scaffold5522.1 |
| Synonym | pfu_aug2.0_1137.1_24714 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5522.1_67267.t1 | 5 | 1 | Ldl_recept_a | 361 | 376 | 2.9e-08 | 33.4 | 0.15 | 1100.0 | -0.4 |
| pfu_aug1.0_5522.1_67267.t1 | 5 | 2 | Ldl_recept_a | 547 | 582 | 2.9e-08 | 33.4 | 3.1e-09 | 2.3e-05 | 24.1 |
| pfu_aug1.0_5522.1_67267.t1 | 5 | 3 | Ldl_recept_a | 1042 | 1066 | 2.9e-08 | 33.4 | 0.095 | 700.0 | 0.2 |
| pfu_aug1.0_5522.1_67267.t1 | 5 | 4 | Ldl_recept_a | 1236 | 1251 | 2.9e-08 | 33.4 | 0.15 | 1100.0 | -0.4 |
| pfu_aug1.0_5522.1_67267.t1 | 5 | 5 | Ldl_recept_a | 1286 | 1320 | 2.9e-08 | 33.4 | 1.9e-09 | 1.4e-05 | 24.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5522.1_67267.t1 | gi|260802360|ref|XP_002596060.1| | hypothetical protein BRAFLDRAFT_66209 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_5522.1_67267.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5522.1_67267.t1 atgtacaacaccggcaaagactcaaagggattacgtatagagggcagcgatgaagtagtcgtttatggtgtaaacaagga gacctactcttgcgatgccttcttggcctttccagtagatgtactaggaactgaatactatgcctgtatgcaccatccaa cctcctatgcaggagaaatcatgattgtggctacggaagacagtacatcagtaagcttcagaatgtcctgtaccgtctct tatggtggaagtagctactcaagaggtcaaactttgaccttatcagtcaaccaatatgactgcgttcagctgcagacttt tgaagatttgaccggtacctacatttcatcaaataagaaaatcgcattctacagtggtaacagaagaacaaggattggag ctggtacatcctcagatcacatcagtgagcagcttatgccagttgatacatggggtaagagatttgccactgtgcccatt ccaactcgtaccactggagactatttcagatttgttgctagcgaagcaggaactgtcgtaactgttagtgggaagagagg gtcatccaacttcaacgaccaattcacactttcaagtgctggaagttttgctgagaagctgtatgcctcaaacctgtact ccttagtagaggctaccaaaccaatccaaatcgtccagtttgtgctgagtcagcagtctgagcccgctgatccggctatg ataatgattccgccaatagaacagtacgccgctgactacgtattctctactccaaaatactcctacggatcctacactaa ttacttcgtcttcatcgtgtcaaacagtcaaaggagcggactgagacttaatggaaatgctttcccgtcaacaacataca acgccatacctggtacagatctagtgggtggttatataatcatttccgagggaacacacagtatccgacatacttctcct atctctgtattctgtggctatctattcggacttgccaagtgggaatcttatggtttaccgggtggaatgagaatggcacc tgtcaacactatttgtgtacctacgaccacagtaacaggagatggtattgataacgactgtgacggtctgatcgacgagg aactttgtcattctacatggcaaggaacagatgacgacagcgatggcaagactgatgaagattgtgcaaaaccaccccca agagttgtaacaacccctcaccacaacatggtggaaactcgtgcagcggtggagcatcccaatcaaaatcgtgcaccaag agcgcatgtccaattaatggaaactggggaggttggtcatcatggacatcgtgtacaaagtcttgtggatcaggatcaaa gagtagaagccgcagctgtaacaaccccgcccctcaacatggcggaagttcttgctcagggggcgcttcatcgtcaacaa gctgtaacacacacagctgtgcagtcgatggtggatgggcgtcttggggttcatggcagacgtgttcggtcacttgtgga ggtggtagccaatcaagaagccgtacatgtacgaacccatcccctcaatatggcggcgctcagtgcccaagcttcagttc ttcatctcaatcgtgcaacacacatcattgtccaattgtgtccgaccgggtggttcacatgcagatctggaggaataaca tgtattgacgagagcttcaaatgtgactgtggaaatgattgtgacgacggaagtgacgaagatgctaattacgccacgtg tagtccacagcttgctgcactttgtgataatgctgctgggagactattactcttggtcaccgtggcctttagtgtcttgc ttgaccgctatgcatcaggggcgccggacaacagaggaaccgtgttcatcataggattcatgcagaaccattacgagaac aatgacgtagagttgttcgtcactacatccagaacaacgactgttagtgtaagagttacctcccccagatatagtaaccc taaaatcgactcatcattttccataacgtcgggacaggttaaacaagtcttcattagcaaccgactacgtatgtataata ctggtaaagactccaagggattacgtatagagggtagcgatgaagtcgtcgtctatggtgtaaacaaggagacctactct tgcgatgccttcttggccttcccagtagatgtactaggaaccgagtattatgcctgtatgcaccatccaacttcatatgc tggagaaatcatgattgtggctacggaagacagtacctctgtaagcttcagaatgtcctgtaccgtctcttatggtggaa gtagctactcaagaggtcaaacgttgaccttagcggtcaatcaatatgactgtgtccagctgcagacctttgaagatttg actggtacctatatttcatcaaataagaaaatcgcattctacagtggtaacagaagaacaaggattggagctggttcatc ctcagatcacatcagtgaacagcttatgccagttgacacatggggtaaaagattcgccactgtgcctattccaactcgta ccactggtgactattttagatttgttgctagcgaagcaggaactgtcgtaactgttagtgggaagagagggtcatccaac ttcaacgaccagtttactctttcaagtgctggaagttttgctgagaagctttatgcctcaaacttgtactccttagtaga agctaccaaacccatccaaatcgtccagtttgtgttgagtcagcagtctgagcccgctgatccggctatgatcatgattc cgccaatagaacagtacgccgccgattacgtattctctactccaaaatactcatacgggtcctacactaattacttcgtc ttcatcgtgtccaacagtcaaaggagcggactgagactaaatggaaatgctttcccctccaccacatacaatgctatccc tggtacagatttggttggaggttacattgtagtagctgaaggaactcataccatcagacatacatcccccatctctgtat tctgtggttacttgtttggacttgccaagtgggaatcttatggtttacctggtggaatgagaatggcccccgtcaacacg atttgtgtcccaaccacaactcaaactggagacggtattgacaatgactgtgatggtttgattgacgaggaattgtgtca tgataactggcaaaacacagatgacgacggcgatggaaaacgggatgaagactgtgccaagccaccaccagtagaagcct ccaagccaatccaaattgtccagtttgtgctgagtcagcagtctgagcccgctgatccggccatgatcatgattcctcca atagagcaatacgccgccgactacgtattctctactccaaaatattcacagggctcctacacaaactacttcgtcttcat cgtgtccaacagccaaaggagtggcttaaggctgaatggtaactcgttcccatctacaacctataacgccatacctggaa cagatttggtgggaggttacatcgtagtagctgaaggaactcataccatcagacatacatctccaatctctgtgttctgt ggctatctatttggacttgccaaatgggaatcttatggtttgccaggcggtatgagaatggctcctgtaaacacgatttg tgtacctacgaccacagtaacaggagacggtattgacaacgactgtgacggtctgatcgacgaggaactctgtcattcta catggcaaggaacagatgacgatggtgacggtacaaacgatgaagactgtgctaagcctcctccaagtaagaatttcatt actgtaaccatgttatgtccagtcgggtggttcacgtgtcagtctggaggaatcacgtgtatagacgaaagctttaagtg cgactgcgcaaacgactgtgacgacggaagtgacgaagattcaacgtatgcatcatgcagtcagaagttatcggccacgt gtggaaatgccgctggatacttgaaatcatcctgggtcatcacagctgtcggattactactagcagctatcttcgtcatc agaagtccataa |
|
Protein
| Protein ID | pfu_aug1.0_5522.1_67267.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5522.1_67267.t1 MYNTGKDSKGLRIEGSDEVVVYGVNKETYSCDAFLAFPVDVLGTEYYACMHHPTSYAGEIMIVATEDSTSVSFRMSCTVS YGGSSYSRGQTLTLSVNQYDCVQLQTFEDLTGTYISSNKKIAFYSGNRRTRIGAGTSSDHISEQLMPVDTWGKRFATVPI PTRTTGDYFRFVASEAGTVVTVSGKRGSSNFNDQFTLSSAGSFAEKLYASNLYSLVEATKPIQIVQFVLSQQSEPADPAM IMIPPIEQYAADYVFSTPKYSYGSYTNYFVFIVSNSQRSGLRLNGNAFPSTTYNAIPGTDLVGGYIIISEGTHSIRHTSP ISVFCGYLFGLAKWESYGLPGGMRMAPVNTICVPTTTVTGDGIDNDCDGLIDEELCHSTWQGTDDDSDGKTDEDCAKPPP RVVTTPHHNMVETRAAVEHPNQNRAPRAHVQLMETGEVGHHGHRVQSLVDQDQRVEAAAVTTPPLNMAEVLAQGALHRQQ AVTHTAVQSMVDGRLGVHGRRVRSLVEVVANQEAVHVRTHPLNMAALSAQASVLHLNRATHIIVQLCPTGWFTCRSGGIT CIDESFKCDCGNDCDDGSDEDANYATCSPQLAALCDNAAGRLLLLVTVAFSVLLDRYASGAPDNRGTVFIIGFMQNHYEN NDVELFVTTSRTTTVSVRVTSPRYSNPKIDSSFSITSGQVKQVFISNRLRMYNTGKDSKGLRIEGSDEVVVYGVNKETYS CDAFLAFPVDVLGTEYYACMHHPTSYAGEIMIVATEDSTSVSFRMSCTVSYGGSSYSRGQTLTLAVNQYDCVQLQTFEDL TGTYISSNKKIAFYSGNRRTRIGAGSSSDHISEQLMPVDTWGKRFATVPIPTRTTGDYFRFVASEAGTVVTVSGKRGSSN FNDQFTLSSAGSFAEKLYASNLYSLVEATKPIQIVQFVLSQQSEPADPAMIMIPPIEQYAADYVFSTPKYSYGSYTNYFV FIVSNSQRSGLRLNGNAFPSTTYNAIPGTDLVGGYIVVAEGTHTIRHTSPISVFCGYLFGLAKWESYGLPGGMRMAPVNT ICVPTTTQTGDGIDNDCDGLIDEELCHDNWQNTDDDGDGKRDEDCAKPPPVEASKPIQIVQFVLSQQSEPADPAMIMIPP IEQYAADYVFSTPKYSQGSYTNYFVFIVSNSQRSGLRLNGNSFPSTTYNAIPGTDLVGGYIVVAEGTHTIRHTSPISVFC GYLFGLAKWESYGLPGGMRMAPVNTICVPTTTVTGDGIDNDCDGLIDEELCHSTWQGTDDDGDGTNDEDCAKPPPSKNFI TVTMLCPVGWFTCQSGGITCIDESFKCDCANDCDDGSDEDSTYASCSQKLSATCGNAAGYLKSSWVITAVGLLLAAIFVI RSP |
|