Gene
| Gene Model ID | pfu_aug1.0_5528.1_09131 |
|---|---|
| Locus | scaffold5528.1 : 32851 ... 39405 : - |
| To GenomeBrowser | scaffold5528.1:32851..39405 |
| Genes list of scaffold | scaffold5528.1 |
| Synonym | pfu_aug2.0_3176.1_22307 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5528.1_09131.t1 | 2 | 1 | SOUL | 46 | 163 | 0.0 | 191.4 | 3.5e-32 | 2.6e-28 | 98.7 |
| pfu_aug1.0_5528.1_09131.t1 | 2 | 2 | SOUL | 174 | 290 | 0.0 | 191.4 | 7.1e-31 | 5.2e-27 | 94.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5528.1_09131.t1 | gi|260786202|ref|XP_002588147.1| | hypothetical protein BRAFLDRAFT_118873 [Branchiostoma floridae] | 2.0e-30 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5528.1_09131.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5528.1_09131.t1 atgtatagattattggtgctatccatcttattgggaagttgcttatcatttgtgatgaatgattttacccaacatggttc attaagtcgccatatccaccacaacaacaaagataaaccagctttctgccatgacttggactgtccaaaatacacactct taaaaagcttcgctggctacgaactgcgacgatatgagatgacacaatgggtaactgctagaaccataacaaacaactac tcacgacaaatcaacagtgaaattttcttctccttgttccgatacatctccgggaataacacagcaggaacaaagattcc tatgacggcaccagttttaaacatcgtcaccccaggttccaccaacgaacaatcctcggtttatgagatgcatttcatga taccccataatatgcagcccttccccccggcacccacggaaccaaccgtctacattacaacattaccacccatggatgtc tatgttaatgctacaaaggccccttcattctgtcatagtttggactgcccaagatacactgtcctccagtcttccccggg ttatgagcttcgtcaatacgcaggcactcagtgggtggctacacggcttatcaacaaaacctacacagatgacatgagaa gggaaatgttccagagtctctttaggtatatctcaggaaacaatacaagcggtgtaaagatcaacatgacgtcacctgtg ctgacgacaatacgtcataccggtaacgttaaccatgacactgtagtggagatgcacttcatgattccctttgccatgca gccctacccacccaggcccactgaatctcacgtctacatcacattcttcccctctgtgagggcttatgtcaagtaa |
|
Protein
| Protein ID | pfu_aug1.0_5528.1_09131.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5528.1_09131.t1 MYRLLVLSILLGSCLSFVMNDFTQHGSLSRHIHHNNKDKPAFCHDLDCPKYTLLKSFAGYELRRYEMTQWVTARTITNNY SRQINSEIFFSLFRYISGNNTAGTKIPMTAPVLNIVTPGSTNEQSSVYEMHFMIPHNMQPFPPAPTEPTVYITTLPPMDV YVNATKAPSFCHSLDCPRYTVLQSSPGYELRQYAGTQWVATRLINKTYTDDMRREMFQSLFRYISGNNTSGVKINMTSPV LTTIRHTGNVNHDTVVEMHFMIPFAMQPYPPRPTESHVYITFFPSVRAYVK |
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