Gene
| Gene Model ID | pfu_aug1.0_55326.1_05570 |
|---|---|
| Locus | scaffold55326.1 : 1 ... 4120 : - |
| To GenomeBrowser | scaffold55326.1:1..4120 |
| Genes list of scaffold | scaffold55326.1 |
| Synonym | pfu_aug2.0_124.1_13633 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_55326.1_05570.t1 | 2 | 1 | RRM_6 | 18 | 87 | 3.9e-08 | 33.1 | 1.2e-07 | 0.0003 | 20.7 |
| pfu_aug1.0_55326.1_05570.t1 | 2 | 1 | RRM_1 | 20 | 87 | 7.6e-06 | 25.4 | 2.7e-06 | 0.0068 | 16.0 |
| pfu_aug1.0_55326.1_05570.t1 | 2 | 2 | RRM_6 | 108 | 154 | 3.9e-08 | 33.1 | 0.00038 | 0.94 | 9.5 |
| pfu_aug1.0_55326.1_05570.t1 | 2 | 2 | RRM_1 | 108 | 153 | 7.6e-06 | 25.4 | 0.0011 | 2.7 | 7.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_55326.1_05570.t1 | gi|260825951|ref|XP_002607929.1| | hypothetical protein BRAFLDRAFT_74879 [Branchiostoma floridae] | 2.0e-30 |
Transcript
| Transcript ID | pfu_aug1.0_55326.1_05570.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_55326.1_05570.t1 gatgatgatggtgatgatgatgaagaagaagatgaagatgatggatgcacgatagaagttcgtggtgtgaaaccaagcac gactgatgataacattgagatgttttttgagaacaaaagaaaatctggaggagaaggggaggttaaaatgaagaaagagg aagaggacgatgaaattgtctactatgtgacatttgagagtaaagaagttgccgagagagttctgtccaagaaatctctc aaattagatggagcggaattggaggttaagctttataaaccacccccaccaccaaaaccagtacctatgtatgagaacag agtgtttataaatggatttggtcctgccaccactaaagacagtttggagaatttccttgaagccaaggcacatgcagatg tgttagatgtaacctatggggaggaagaggggactgctttagtcacttttgaggctccaccagagggtgtagctgtcatt ttagagaaagaatcaaaagagatcatcattgtgggtcataaaggtccagttttagatgtccaaagtaaagcgagtgccat aattaaaaaagtctctgatgatcttgataaaaagaagcagcaggtcactgaaaaaatgcctttgaagtatcaccagttga tgtacctgtcaatgcagcatttcaaagaagaaatggagaaacagttcccagacatgaaattagagtttaagatgaaagag aaagaaatcattctcagtggtctttctggtaatgttacaagtgccaaattacttcttctagaaagactgaatgcagtgtg ttcctccagtgctggagtcttttcaaaacaaagagtcagctttctacttggaaataatgaagttaagaaacatatagcac agaaaatgaaggaagcaaatattttgtccgtattcgaagtacagaacaaagaagaggtgatgacgtatgctgccacggat gaagatgccgtcaaggccgcacatatcataaaaggagaaatcgttgagtcacctgtacaagttcccaaaagttcaatgta cctgctagatgatccaaagtatgtacagaaatgtgatgaaataaagaaagactatccccttgtcacttttactgtcatga aaaaggaatccagtgttgtcattgtcaccgtgaatgaaaacctggcaaacataagagagatgattcaggatttcttcaca ttcaatacaattttcaccgaggagatgaatttgactccacatatgttgaagtttttgaacataaggtacaaaagagatat agaaaaaataccaaaggacttggtgcgccttcaagttggtgtagagctttctagacaaaaaatagtcataaaaggcacca gagatggtcttacacaggcaaaacagcaaattgataatatcctgaataacataaagaagagacgacatgatctcaagaga ccaggaattgtcaaattgatcaggtcagagcaaggaaaagcgaagatttcaaaggtggaaaaatcctctcgatgtatgat aatgatggagggagatgaggagaggtcaggtggtcaagatcaggacatggtcagaagctggtcaggacaacatggaggat ctacaaaactgaataacggagaggtggccaaacatcgtagtcagtcaggtgtgacgatcttggtacataaaggtgatctt accagcatgtatgtggacatgctagttaatgctgccaatccagagctcagacataatggtggtctggccaaagcacttgt caaaaaaggtttgtag |
|
Protein
| Protein ID | pfu_aug1.0_55326.1_05570.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_55326.1_05570.t1 DDDGDDDEEEDEDDGCTIEVRGVKPSTTDDNIEMFFENKRKSGGEGEVKMKKEEEDDEIVYYVTFESKEVAERVLSKKSL KLDGAELEVKLYKPPPPPKPVPMYENRVFINGFGPATTKDSLENFLEAKAHADVLDVTYGEEEGTALVTFEAPPEGVAVI LEKESKEIIIVGHKGPVLDVQSKASAIIKKVSDDLDKKKQQVTEKMPLKYHQLMYLSMQHFKEEMEKQFPDMKLEFKMKE KEIILSGLSGNVTSAKLLLLERLNAVCSSSAGVFSKQRVSFLLGNNEVKKHIAQKMKEANILSVFEVQNKEEVMTYAATD EDAVKAAHIIKGEIVESPVQVPKSSMYLLDDPKYVQKCDEIKKDYPLVTFTVMKKESSVVIVTVNENLANIREMIQDFFT FNTIFTEEMNLTPHMLKFLNIRYKRDIEKIPKDLVRLQVGVELSRQKIVIKGTRDGLTQAKQQIDNILNNIKKRRHDLKR PGIVKLIRSEQGKAKISKVEKSSRCMIMMEGDEERSGGQDQDMVRSWSGQHGGSTKLNNGEVAKHRSQSGVTILVHKGDL TSMYVDMLVNAANPELRHNGGLAKALVKKGL |
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