Gene
| Gene Model ID | pfu_aug1.0_5553.1_09142 |
|---|---|
| Locus | scaffold5553.1 : 82211 ... 107135 : - |
| To GenomeBrowser | scaffold5553.1:82211..107135 |
| Genes list of scaffold | scaffold5553.1 |
| Synonym | pfu_aug2.0_14660.1_03186 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin like |
| Description | Blast best hit to DDBJ HQ326642 (Heterocephalus glaber ) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5553.1_09142.t1 | 4 | 1 | EF-hand_1 | 88 | 116 | 7.9e-32 | 106.1 | 1.1e-10 | 1.4e-07 | 30.3 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 1 | EF-hand_8 | 88 | 106 | 2.2e-26 | 91.2 | 9.8e-06 | 0.012 | 15.2 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 1 | EF-hand_6 | 88 | 117 | 7.9e-24 | 81.3 | 1.9e-09 | 2.3e-06 | 26.9 |
| pfu_aug1.0_5553.1_09142.t1 | 2 | 1 | EF-hand_7 | 89 | 149 | 4.7e-30 | 103.5 | 6.8e-17 | 8.4e-14 | 51.4 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 1 | EF-hand_5 | 89 | 113 | 2.7e-24 | 83.3 | 1.1e-08 | 1.4e-05 | 24.2 |
| pfu_aug1.0_5553.1_09142.t1 | 2 | 1 | SPARC_Ca_bdg | 92 | 146 | 1.2e-07 | 31.7 | 3.1e-05 | 0.038 | 14.0 |
| pfu_aug1.0_5553.1_09142.t1 | 2 | 1 | EF-hand_9 | 92 | 150 | 7.4e-06 | 25.7 | 6.4e-07 | 0.00079 | 19.2 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 2 | EF-hand_8 | 102 | 150 | 2.2e-26 | 91.2 | 6.7e-13 | 8.3e-10 | 38.1 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 2 | EF-hand_1 | 124 | 151 | 7.9e-32 | 106.1 | 3.3e-11 | 4.0e-08 | 31.9 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 2 | EF-hand_6 | 124 | 151 | 7.9e-24 | 81.3 | 2.0e-06 | 0.0025 | 17.5 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 2 | EF-hand_5 | 125 | 148 | 2.7e-24 | 83.3 | 3.4e-06 | 0.0042 | 16.3 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 3 | EF-hand_8 | 158 | 178 | 2.2e-26 | 91.2 | 1.6e-05 | 0.02 | 14.4 |
| pfu_aug1.0_5553.1_09142.t1 | 2 | 2 | SPARC_Ca_bdg | 160 | 215 | 1.2e-07 | 31.7 | 9.0e-06 | 0.011 | 15.7 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 3 | EF-hand_1 | 161 | 188 | 7.9e-32 | 106.1 | 1.0e-09 | 1.3e-06 | 27.3 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 3 | EF-hand_6 | 161 | 190 | 7.9e-24 | 81.3 | 1.4e-10 | 1.7e-07 | 30.4 |
| pfu_aug1.0_5553.1_09142.t1 | 2 | 2 | EF-hand_7 | 162 | 216 | 4.7e-30 | 103.5 | 6.6e-17 | 8.1e-14 | 51.5 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 3 | EF-hand_5 | 162 | 185 | 2.7e-24 | 83.3 | 1.0e-09 | 1.3e-06 | 27.5 |
| pfu_aug1.0_5553.1_09142.t1 | 2 | 2 | EF-hand_9 | 164 | 213 | 7.4e-06 | 25.7 | 0.027 | 34.0 | 4.4 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 4 | EF-hand_8 | 178 | 216 | 2.2e-26 | 91.2 | 2.8e-11 | 3.5e-08 | 32.9 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 4 | EF-hand_1 | 197 | 216 | 7.9e-32 | 106.1 | 5.2e-07 | 0.00065 | 18.8 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 4 | EF-hand_5 | 198 | 215 | 2.7e-24 | 83.3 | 1.6e-05 | 0.02 | 14.2 |
| pfu_aug1.0_5553.1_09142.t1 | 4 | 4 | EF-hand_6 | 198 | 215 | 7.9e-24 | 81.3 | 0.0084 | 10.0 | 6.2 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5553.1_09142.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5553.1_09142.t1 atgttaagcaatgaaaatatgccaaaaaaagggggaaaatatattatcactaaaatattttctgtgaaggctttgcagag tattgatgtcggatcgacaatcttgatcgttgtcagtggtaaaaccgttttaagttttgaagcaatgacaaatcaatgtc ataattcgaagaagctgttttttcgaatagctacgccgctgtcagattcacctttagcctgcacccgcgccttcagctat cactatattgtactattttcagaattaaaggatgtgtttgacgagtttgacagagacggagacgggatcataacaacacg ggagctaggtactgtcatggcgtcactggggatgtgtccgacagaggcggagctacaggacatcatcaatcacgtggact ctgacggaaacggaactattgatttcccagaattcctaaatatgatggctaccaaaatggacaatttggacagcgagtcc gaaataaaagaaacattccgattattcgacaaaaatggcgatggatatatatcagcatgggaactaaggctcgtcatggc taacctgggagagagactcaacgaccacgagatagaggccatgttgagggaggctgacgtagacggggatggcgtcatca actatgaagggagaattgacatacgataa |
|
Protein
| Protein ID | pfu_aug1.0_5553.1_09142.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5553.1_09142.t1 MLSNENMPKKGGKYIITKIFSVKALQSIDVGSTILIVVSGKTVLSFEAMTNQCHNSKKLFFRIATPLSDSPLACTRAFSY HYIVLFSELKDVFDEFDRDGDGIITTRELGTVMASLGMCPTEAELQDIINHVDSDGNGTIDFPEFLNMMATKMDNLDSES EIKETFRLFDKNGDGYISAWELRLVMANLGERLNDHEIEAMLREADVDGDGVINYEGRIDIR |
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