Gene
| Gene Model ID | pfu_aug1.0_5555.1_09148 |
|---|---|
| Locus | scaffold5555.1 : 72581 ... 99325 : - |
| To GenomeBrowser | scaffold5555.1:72581..99325 |
| Genes list of scaffold | scaffold5555.1 |
| Synonym | pfu_aug2.0_281.1_03931 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5555.1_09148.t1 | 3 | 1 | I-set | 3 | 24 | 7.1e-06 | 25.7 | 0.15 | 250.0 | 1.5 |
| pfu_aug1.0_5555.1_09148.t1 | 3 | 2 | I-set | 29 | 43 | 7.1e-06 | 25.7 | 0.12 | 200.0 | 1.8 |
| pfu_aug1.0_5555.1_09148.t1 | 2 | 1 | DB | 54 | 103 | 2.0e-14 | 53.3 | 2.9e-08 | 4.8e-05 | 23.3 |
| pfu_aug1.0_5555.1_09148.t1 | 3 | 1 | fn3 | 134 | 212 | 5.0e-30 | 103.4 | 2.0e-18 | 3.3e-15 | 55.9 |
| pfu_aug1.0_5555.1_09148.t1 | 3 | 1 | Interfer-bind | 163 | 215 | 3.0e-06 | 27.2 | 0.00028 | 0.46 | 10.5 |
| pfu_aug1.0_5555.1_09148.t1 | 3 | 2 | fn3 | 280 | 351 | 5.0e-30 | 103.4 | 4.5e-10 | 7.3e-07 | 29.2 |
| pfu_aug1.0_5555.1_09148.t1 | 3 | 2 | Interfer-bind | 296 | 344 | 3.0e-06 | 27.2 | 0.00016 | 0.26 | 11.3 |
| pfu_aug1.0_5555.1_09148.t1 | 3 | 3 | I-set | 367 | 434 | 7.1e-06 | 25.7 | 5.6e-07 | 0.00093 | 19.0 |
| pfu_aug1.0_5555.1_09148.t1 | 2 | 2 | DB | 436 | 545 | 2.0e-14 | 53.3 | 5.6e-14 | 9.2e-11 | 41.6 |
| pfu_aug1.0_5555.1_09148.t1 | 3 | 3 | fn3 | 552 | 576 | 5.0e-30 | 103.4 | 2.2e-07 | 0.00036 | 20.6 |
| pfu_aug1.0_5555.1_09148.t1 | 3 | 3 | Interfer-bind | 552 | 575 | 3.0e-06 | 27.2 | 0.0095 | 16.0 | 5.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5555.1_09148.t1 | gi|170049506|ref|XP_001856905.1| | conserved hypothetical protein [Culex quinquefasciatus] | 1.0e-21 |
Transcript
| Transcript ID | pfu_aug1.0_5555.1_09148.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5555.1_09148.t1 atggtatcaacaccacggacggtagaagtagagagtggacagggtactatgttagagtgtgttattcaagaccttggtaa cagaaagcaagcagatgtaggtcattataaatgtcatgtggatggtgccgttaatgtatcagtatcatatcaactggtct taactgatggtaagaaccatgccggatgttgtaagagacgtaatgtaccagatatctgcttagattactgtatgggacag atgcctgccgttgttacagccgaacacgataagtgtctgaatgatgtaatggacatcatagcatgttatgaggatgggca ggccgaacacgataaatgtctgaatgatgtgatggacatcatagcatgttatgaggatgggcaggtaagtttaccaaagt ctcctcagaatctgacgatcgtacgtgtcacagctcacacagtcatgttgtcatggaaacagccagacaccacacaagtt cccgtgtcatcgtatgaagtgctctatacaacagacatgaccaaaaaatggatgtcttcatctacaagtgtaaccaccca catcgttaacaacttgaagcccagtacactttactacgtccaggttatagcggtaaattctaatggtaccagtctggcat cacccatgataatatttaccaccctggattatgatgattctgctccaagtgtaggctgtaactatacaatgtacaaagat accgctctgatttatgacagtatggtctcgtctagtaacactaataccatggaggaatgccgacagctcctaccattaat acaactattgactggacagccatatggcataacagatcagattgtcagtgttagcactgacttcgtaacactaagctggg agatgcctgtctccaactgtgatacaaactgctcgtacaaagtcatgatcataaagaaggacggtgccgagttccagaat gcaacaatagatagaatgtacaagctgaggaatttgaaaccaagtacaaagtacaccttatcagtggtagccattaatac atacggtagtagtctaccagctcttacacaggacgtcataacgttaccgtcttctgacaaaataacgtggcagaaagatg gaaagaacgtaaaagacttgtcagacagcttcaggtcctacgctacacagaaaccgatactagggacggcactgattaag tctgtattgtccatatactatgtgacagataaaagtgtcggagactatacttgtattggagaaaataagttcggaaatgc cacaggtcacatgagattaacaaagtgctgtaagatgaacaatttacaagatgcttgcttggagatctgccattataaca ttgacataacattggttttactaaatcctacaagatatgagaattgtttatcacatctacaggtctacatcagctgtgct acagaatacaaaagtgaaatgacaaacttaataaatgaatttttagatggcaaggaccacagtaagtgttgtaccaagaa gggtgtgacagacagatgtatgccgttctgtgccggtcagtatcctgatgttagggacgaggatgaattgttattctgtg tggcagatctaccaaccatactcaactgtgtacaggagggtgtccgtaagggcaaaaagaatgtaacatctgtggagcta acaaatctacagcccaacactaattataactttgaggtggtagctgtaggctatggtcgtagtggaggagcagcccctct cagtggtgacagtatggcaaggaaagctcttacaggtcaaaatgaaaactacaacaaacctactggagaagcagaaaggg aagtccctcacaagctgtctcttttgagaatcctcagtatggaagcagagttcagtggaatcatttatcgagtaaaattc tgtatatcaggtctccctgataatcactatgacaacacctcgcaggacgagtcattcggatatgccccgcttcgagagga aacggaaatagaacatcataacccaaagtcgtacgaagcagcaaaactcgatgttagccaaagctga |
|
Protein
| Protein ID | pfu_aug1.0_5555.1_09148.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5555.1_09148.t1 MVSTPRTVEVESGQGTMLECVIQDLGNRKQADVGHYKCHVDGAVNVSVSYQLVLTDGKNHAGCCKRRNVPDICLDYCMGQ MPAVVTAEHDKCLNDVMDIIACYEDGQAEHDKCLNDVMDIIACYEDGQVSLPKSPQNLTIVRVTAHTVMLSWKQPDTTQV PVSSYEVLYTTDMTKKWMSSSTSVTTHIVNNLKPSTLYYVQVIAVNSNGTSLASPMIIFTTLDYDDSAPSVGCNYTMYKD TALIYDSMVSSSNTNTMEECRQLLPLIQLLTGQPYGITDQIVSVSTDFVTLSWEMPVSNCDTNCSYKVMIIKKDGAEFQN ATIDRMYKLRNLKPSTKYTLSVVAINTYGSSLPALTQDVITLPSSDKITWQKDGKNVKDLSDSFRSYATQKPILGTALIK SVLSIYYVTDKSVGDYTCIGENKFGNATGHMRLTKCCKMNNLQDACLEICHYNIDITLVLLNPTRYENCLSHLQVYISCA TEYKSEMTNLINEFLDGKDHSKCCTKKGVTDRCMPFCAGQYPDVRDEDELLFCVADLPTILNCVQEGVRKGKKNVTSVEL TNLQPNTNYNFEVVAVGYGRSGGAAPLSGDSMARKALTGQNENYNKPTGEAEREVPHKLSLLRILSMEAEFSGIIYRVKF CISGLPDNHYDNTSQDESFGYAPLREETEIEHHNPKSYEAAKLDVSQS |
|