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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_5555.1_09148
Locus scaffold5555.1 : 72581 ... 99325 : -
To GenomeBrowser scaffold5555.1:72581..99325
Genes list of scaffold scaffold5555.1
Synonym pfu_aug2.0_281.1_03931

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_5555.1_09148.t1 3 1 I-set 3 24 7.1e-06 25.7 0.15 250.0 1.5
pfu_aug1.0_5555.1_09148.t1 3 2 I-set 29 43 7.1e-06 25.7 0.12 200.0 1.8
pfu_aug1.0_5555.1_09148.t1 2 1 DB 54 103 2.0e-14 53.3 2.9e-08 4.8e-05 23.3
pfu_aug1.0_5555.1_09148.t1 3 1 fn3 134 212 5.0e-30 103.4 2.0e-18 3.3e-15 55.9
pfu_aug1.0_5555.1_09148.t1 3 1 Interfer-bind 163 215 3.0e-06 27.2 0.00028 0.46 10.5
pfu_aug1.0_5555.1_09148.t1 3 2 fn3 280 351 5.0e-30 103.4 4.5e-10 7.3e-07 29.2
pfu_aug1.0_5555.1_09148.t1 3 2 Interfer-bind 296 344 3.0e-06 27.2 0.00016 0.26 11.3
pfu_aug1.0_5555.1_09148.t1 3 3 I-set 367 434 7.1e-06 25.7 5.6e-07 0.00093 19.0
pfu_aug1.0_5555.1_09148.t1 2 2 DB 436 545 2.0e-14 53.3 5.6e-14 9.2e-11 41.6
pfu_aug1.0_5555.1_09148.t1 3 3 fn3 552 576 5.0e-30 103.4 2.2e-07 0.00036 20.6
pfu_aug1.0_5555.1_09148.t1 3 3 Interfer-bind 552 575 3.0e-06 27.2 0.0095 16.0 5.6

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_5555.1_09148.t1 gi|170049506|ref|XP_001856905.1| conserved hypothetical protein [Culex quinquefasciatus] 1.0e-21

Transcript
Transcript IDpfu_aug1.0_5555.1_09148.t1
Definition-
>pfu_aug1.0_5555.1_09148.t1
atggtatcaacaccacggacggtagaagtagagagtggacagggtactatgttagagtgtgttattcaagaccttggtaa
cagaaagcaagcagatgtaggtcattataaatgtcatgtggatggtgccgttaatgtatcagtatcatatcaactggtct
taactgatggtaagaaccatgccggatgttgtaagagacgtaatgtaccagatatctgcttagattactgtatgggacag
atgcctgccgttgttacagccgaacacgataagtgtctgaatgatgtaatggacatcatagcatgttatgaggatgggca
ggccgaacacgataaatgtctgaatgatgtgatggacatcatagcatgttatgaggatgggcaggtaagtttaccaaagt
ctcctcagaatctgacgatcgtacgtgtcacagctcacacagtcatgttgtcatggaaacagccagacaccacacaagtt
cccgtgtcatcgtatgaagtgctctatacaacagacatgaccaaaaaatggatgtcttcatctacaagtgtaaccaccca
catcgttaacaacttgaagcccagtacactttactacgtccaggttatagcggtaaattctaatggtaccagtctggcat
cacccatgataatatttaccaccctggattatgatgattctgctccaagtgtaggctgtaactatacaatgtacaaagat
accgctctgatttatgacagtatggtctcgtctagtaacactaataccatggaggaatgccgacagctcctaccattaat
acaactattgactggacagccatatggcataacagatcagattgtcagtgttagcactgacttcgtaacactaagctggg
agatgcctgtctccaactgtgatacaaactgctcgtacaaagtcatgatcataaagaaggacggtgccgagttccagaat
gcaacaatagatagaatgtacaagctgaggaatttgaaaccaagtacaaagtacaccttatcagtggtagccattaatac
atacggtagtagtctaccagctcttacacaggacgtcataacgttaccgtcttctgacaaaataacgtggcagaaagatg
gaaagaacgtaaaagacttgtcagacagcttcaggtcctacgctacacagaaaccgatactagggacggcactgattaag
tctgtattgtccatatactatgtgacagataaaagtgtcggagactatacttgtattggagaaaataagttcggaaatgc
cacaggtcacatgagattaacaaagtgctgtaagatgaacaatttacaagatgcttgcttggagatctgccattataaca
ttgacataacattggttttactaaatcctacaagatatgagaattgtttatcacatctacaggtctacatcagctgtgct
acagaatacaaaagtgaaatgacaaacttaataaatgaatttttagatggcaaggaccacagtaagtgttgtaccaagaa
gggtgtgacagacagatgtatgccgttctgtgccggtcagtatcctgatgttagggacgaggatgaattgttattctgtg
tggcagatctaccaaccatactcaactgtgtacaggagggtgtccgtaagggcaaaaagaatgtaacatctgtggagcta
acaaatctacagcccaacactaattataactttgaggtggtagctgtaggctatggtcgtagtggaggagcagcccctct
cagtggtgacagtatggcaaggaaagctcttacaggtcaaaatgaaaactacaacaaacctactggagaagcagaaaggg
aagtccctcacaagctgtctcttttgagaatcctcagtatggaagcagagttcagtggaatcatttatcgagtaaaattc
tgtatatcaggtctccctgataatcactatgacaacacctcgcaggacgagtcattcggatatgccccgcttcgagagga
aacggaaatagaacatcataacccaaagtcgtacgaagcagcaaaactcgatgttagccaaagctga

Protein
Protein IDpfu_aug1.0_5555.1_09148.t1
Definition-
>pfu_aug1.0_5555.1_09148.t1
MVSTPRTVEVESGQGTMLECVIQDLGNRKQADVGHYKCHVDGAVNVSVSYQLVLTDGKNHAGCCKRRNVPDICLDYCMGQ
MPAVVTAEHDKCLNDVMDIIACYEDGQAEHDKCLNDVMDIIACYEDGQVSLPKSPQNLTIVRVTAHTVMLSWKQPDTTQV
PVSSYEVLYTTDMTKKWMSSSTSVTTHIVNNLKPSTLYYVQVIAVNSNGTSLASPMIIFTTLDYDDSAPSVGCNYTMYKD
TALIYDSMVSSSNTNTMEECRQLLPLIQLLTGQPYGITDQIVSVSTDFVTLSWEMPVSNCDTNCSYKVMIIKKDGAEFQN
ATIDRMYKLRNLKPSTKYTLSVVAINTYGSSLPALTQDVITLPSSDKITWQKDGKNVKDLSDSFRSYATQKPILGTALIK
SVLSIYYVTDKSVGDYTCIGENKFGNATGHMRLTKCCKMNNLQDACLEICHYNIDITLVLLNPTRYENCLSHLQVYISCA
TEYKSEMTNLINEFLDGKDHSKCCTKKGVTDRCMPFCAGQYPDVRDEDELLFCVADLPTILNCVQEGVRKGKKNVTSVEL
TNLQPNTNYNFEVVAVGYGRSGGAAPLSGDSMARKALTGQNENYNKPTGEAEREVPHKLSLLRILSMEAEFSGIIYRVKF
CISGLPDNHYDNTSQDESFGYAPLREETEIEHHNPKSYEAAKLDVSQS

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