Gene
| Gene Model ID | pfu_aug1.0_5570.1_52571 |
|---|---|
| Locus | scaffold5570.1 : 10726 ... 18989 : + |
| To GenomeBrowser | scaffold5570.1:10726..18989 |
| Genes list of scaffold | scaffold5570.1 |
| Synonym | pfu_aug2.0_1707.1_25095 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5570.1_52571.t1 | 1 | 1 | Ribosomal_L11_N | 27 | 85 | 1.3e-23 | 82.2 | 3.8e-27 | 2.9e-23 | 81.1 |
| pfu_aug1.0_5570.1_52571.t1 | 1 | 1 | Ribosomal_L11 | 92 | 161 | 1.1e-22 | 79.9 | 1.4e-26 | 1.1e-22 | 79.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5570.1_52571.t1 | gi|91086019|ref|XP_972971.1| | PREDICTED: 39S ribosomal protein L11, mitochondrial [Tribolium castaneum] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5570.1_52571.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5570.1_52571.t1 atggcatcgagaaaagcagcaggtgctgcgaagcaggtcatgaaaaagaaggtcgccaagaaagttgatcaccctcccta tcttaaactaagaatccctgcaggagaggcatcacccgctccacctgtcgggcctcagcttgcccagagatcaatacaga ttccggcattcatcaaagaattcaatgaaaagaccaaggatataaaagaaggtttacccattccaactgaagtctttata aatcctgacagatcaataagaatggttctgtacaaaccagaagtaaactattttctgaagcaggcggctggaataaagaa agggaggataaaaggaggagatgaagtagctggaatgttatcactaaagcatatttatgaaattgctaaaatcaaacaga ctgacgataacttttctggaaaaacgttatacgaaatatgtaaagacattatcggaactgcacattcattagggattcaa gtagtgagggaactgaagccggaagaatatggagaatttcttaaagagagaaacaagtttgttgaagagtgcgagagaga actagaggaggcaagacaagctaaattgttacgattgtga |
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Protein
| Protein ID | pfu_aug1.0_5570.1_52571.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5570.1_52571.t1 MASRKAAGAAKQVMKKKVAKKVDHPPYLKLRIPAGEASPAPPVGPQLAQRSIQIPAFIKEFNEKTKDIKEGLPIPTEVFI NPDRSIRMVLYKPEVNYFLKQAAGIKKGRIKGGDEVAGMLSLKHIYEIAKIKQTDDNFSGKTLYEICKDIIGTAHSLGIQ VVRELKPEEYGEFLKERNKFVEECERELEEARQAKLLRL |
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