Gene
| Gene Model ID | pfu_aug1.0_5570.1_52572 |
|---|---|
| Locus | scaffold5570.1 : 23689 ... 35375 : - |
| To GenomeBrowser | scaffold5570.1:23689..35375 |
| Genes list of scaffold | scaffold5570.1 |
| Synonym | pfu_aug2.0_1707.1_25096 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5570.1_52572.t1 | 1 | 1 | DUF947 | 169 | 323 | 1.2e-30 | 106.5 | 1.6e-34 | 1.2e-30 | 106.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5570.1_52572.t1 | gi|260791728|ref|XP_002590880.1| | hypothetical protein BRAFLDRAFT_269866 [Branchiostoma floridae] | 5.04467e-44 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5570.1_52572.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5570.1_52572.t1 atgtctctcagtcgtcagaagaaactgaaagatgaaggaagaattagaactgatcataaaacaatgaagactacacaaaa tttcaaacatagaaaaaatgatagacctagaagtagaacctttggagatctatcaaatccagctgatgacgatgtcagtg atgatgattctggagatgagatgcctaatgttgcatcttctagaagaaaaagaaaacaaaacgcttcaaaacatagtgac agcattgtagatgacaatgatgatgaagaagatgttgatatgtctgaagaagaagaagaagaagaagaggatatgagaaa agatgaggagagtgatgatatgcaagatgaagaggaggaggaggatccttatgcggcagttagagaagaaatatcctctt tatcttttgaagaacttcagctgcttaaagacaagcttggcctaaaagtctttcaccaaattatgagaggaaaaagagaa gaagagaaagggaaaaaagtctacaaaagagaaaataaaaacaggcctatggagatgtcatcaaaacgtccagtgcccag attcagagaaattgttactgtcaagaaaaaggccaagagagatccacggtttgatgacttgtctggagaatttaatccac atatatttagtaaaacttactcattcctaggtgatgttaaaattcgagaaaaagaggttattcagaaaaagctgaaaaaa gagaaggatccagagaggaaacaagagatgcaatatttgctgaacagaatggtaaatttaagttcctctgtttggttgtg gcacatgaaaaaaaaaaaatctattttagcaacttcatgtaaaattgaattttcctctgatctgaggaaacttgagctgg cagagaagtataaagagctgaagaaaacgggaaaagtagataagtacctaagtaagaagaggaagaagacagcacagaaa gagaagaaacatcttcctacatga |
|
Protein
| Protein ID | pfu_aug1.0_5570.1_52572.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5570.1_52572.t1 MSLSRQKKLKDEGRIRTDHKTMKTTQNFKHRKNDRPRSRTFGDLSNPADDDVSDDDSGDEMPNVASSRRKRKQNASKHSD SIVDDNDDEEDVDMSEEEEEEEEDMRKDEESDDMQDEEEEEDPYAAVREEISSLSFEELQLLKDKLGLKVFHQIMRGKRE EEKGKKVYKRENKNRPMEMSSKRPVPRFREIVTVKKKAKRDPRFDDLSGEFNPHIFSKTYSFLGDVKIREKEVIQKKLKK EKDPERKQEMQYLLNRMVNLSSSVWLWHMKKKKSILATSCKIEFSSDLRKLELAEKYKELKKTGKVDKYLSKKRKKTAQK EKKHLPT |
|