Gene
| Gene Model ID | pfu_aug1.0_5570.1_52573 |
|---|---|
| Locus | scaffold5570.1 : 36753 ... 42755 : - |
| To GenomeBrowser | scaffold5570.1:36753..42755 |
| Genes list of scaffold | scaffold5570.1 |
| Synonym | pfu_aug2.0_1707.1_25097 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5570.1_52573.t1 | 2 | 1 | EF-hand_8 | 13 | 31 | 6.3e-11 | 41.7 | 0.042 | 130.0 | 2.3 |
| pfu_aug1.0_5570.1_52573.t1 | 1 | 1 | EF-hand_7 | 19 | 76 | 6.0e-13 | 48.7 | 2.6e-16 | 7.6e-13 | 48.4 |
| pfu_aug1.0_5570.1_52573.t1 | 2 | 1 | EF-hand_1 | 19 | 45 | 1.8e-10 | 39.2 | 0.00018 | 0.52 | 9.7 |
| pfu_aug1.0_5570.1_52573.t1 | 2 | 1 | EF-hand_6 | 19 | 44 | 5.8e-10 | 38.2 | 1.4e-05 | 0.042 | 13.7 |
| pfu_aug1.0_5570.1_52573.t1 | 2 | 1 | EF-hand_5 | 19 | 43 | 3.7e-06 | 26.0 | 0.0036 | 11.0 | 5.5 |
| pfu_aug1.0_5570.1_52573.t1 | 2 | 2 | EF-hand_8 | 32 | 79 | 6.3e-11 | 41.7 | 1.7e-13 | 5.1e-10 | 38.8 |
| pfu_aug1.0_5570.1_52573.t1 | 2 | 2 | EF-hand_1 | 55 | 80 | 1.8e-10 | 39.2 | 1.4e-10 | 4.3e-07 | 28.7 |
| pfu_aug1.0_5570.1_52573.t1 | 2 | 2 | EF-hand_6 | 56 | 80 | 5.8e-10 | 38.2 | 1.8e-08 | 5.5e-05 | 22.7 |
| pfu_aug1.0_5570.1_52573.t1 | 2 | 2 | EF-hand_5 | 57 | 75 | 3.7e-06 | 26.0 | 2.2e-08 | 6.5e-05 | 22.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5570.1_52573.t1 | gi|291238692|ref|XP_002739265.1| | PREDICTED: EF-hand calcium-binding domain-containing protein 11-like [Saccoglossus kowalevskii] | 3.0e-24 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5570.1_52573.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5570.1_52573.t1 atgtacctgagggcaatgacagagaaggtatccaaacttgatctagatgaacagattagacacacatttatggccatgga cttccagtgtcatggatttctgactgtagaggatttgagacgagcattcagtgaggtggcaccccatataccagcacaca gtatcgatactgctttcagggagctagatcgtgatggagatggtaggattagttataaagactttgatttcatgatgaag tatgatgtacagtcccacatctga |
|
Protein
| Protein ID | pfu_aug1.0_5570.1_52573.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5570.1_52573.t1 MYLRAMTEKVSKLDLDEQIRHTFMAMDFQCHGFLTVEDLRRAFSEVAPHIPAHSIDTAFRELDRDGDGRISYKDFDFMMK YDVQSHI |
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