Gene
| Gene Model ID | pfu_aug1.0_5576.1_52575 |
|---|---|
| Locus | scaffold5576.1 : 29576 ... 55235 : - |
| To GenomeBrowser | scaffold5576.1:29576..55235 |
| Genes list of scaffold | scaffold5576.1 |
| Synonym | pfu_aug2.0_1579.1_31779 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5576.1_52575.t1 | 1 | 1 | adh_short_C2 | 27 | 219 | 5.2e-07 | 29.6 | 1.3e-10 | 6.4e-07 | 29.3 |
| pfu_aug1.0_5576.1_52575.t1 | 1 | 1 | adh_short | 31 | 151 | 4.9e-15 | 55.8 | 1.7e-18 | 8.3e-15 | 55.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5576.1_52575.t1 | gi|72006882|ref|XP_780014.1| | PREDICTED: 3-hydroxyacyl-CoA dehydrogenase type-2 [Strongylocentrotus purpuratus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5576.1_52575.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5576.1_52575.t1 atggccagagttaagcctctgtacaagaaaggtagtaagtttgatgtcggaaactaccgtcctgttagcatcttaaacat tatatcaaaggtcacaaattcaaagaatgtgatccaagctgtcaacactgccgtacaaaactttggcaagttggatgtta atgtaaactgtgcaggagtaggaatcgcagccaaaatcttcaatgcaaagacaagtgaacctcattccttagaagagttt caaaaagttttgatggtcaatactatgggaactttcaatgtcatgcggttatgtgttggagccatgaataaaaacgaacc agatctcaacggacaaagaggggttattgtcaacactgccagtattgcggcatttgaaggacaaatgggtcaggtagcat atgccgctagtaaaggaggcattgtgggaatgacattaccgttagctagagatttaagtgttggcggtataagagtgtgt acgatagccccaggtttaattgacacaccactcctagcaagtctaccagaaagagttcgggcgattctagtcaagaccat tccttttccccaaaggctcggggacccagctgagtttgcacatctagcccaggcaatcatagagaatcctttacttaacg gtacaactatcagattagacggtgcactccggatggttcactag |
|
Protein
| Protein ID | pfu_aug1.0_5576.1_52575.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5576.1_52575.t1 MARVKPLYKKGSKFDVGNYRPVSILNIISKVTNSKNVIQAVNTAVQNFGKLDVNVNCAGVGIAAKIFNAKTSEPHSLEEF QKVLMVNTMGTFNVMRLCVGAMNKNEPDLNGQRGVIVNTASIAAFEGQMGQVAYAASKGGIVGMTLPLARDLSVGGIRVC TIAPGLIDTPLLASLPERVRAILVKTIPFPQRLGDPAEFAHLAQAIIENPLLNGTTIRLDGALRMVH |
|