Gene
| Gene Model ID | pfu_aug1.0_55773.1_48839 |
|---|---|
| Locus | scaffold55773.1 : 1 ... 4055 : - |
| To GenomeBrowser | scaffold55773.1:1..4055 |
| Genes list of scaffold | scaffold55773.1 |
| Synonym | pfu_aug2.0_216.1_20443 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_55773.1_48839.t1 | 1 | 1 | FHA | 194 | 274 | 4.2e-17 | 62.0 | 9.7e-21 | 7.2e-17 | 61.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_55773.1_48839.t1 | gi|291241827|ref|XP_002740817.1| | PREDICTED: smad nuclear-interacting protein 1-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_55773.1_48839.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_55773.1_48839.t1 atgggtaagagtgactattcaagtgacgaagagaggagacacaaaaagaaacacagacgaagaaggccatcatccgaaag tccaacaaggcatagaagtaaatctgatagaaaaagatctgggagtcacagtcctttcatcaagccagacccagatgctg tacccaccagacacaaaatcaaaaaagagagggacagagataggagagatagacatgactttgatcctcacagaccaata aagagggaaccaagcgacgatcagaggagggagcgaaggcggcatgatgaacgcaggatggaggcaaggaggggcagggg agctaatccatttgaggaatcatcaggggaattcggacgtacagatggacaatcaggagaaaggggtacaaacaagccaa aagaaaaaccaagtctagaactttcagggaaactagctgaagatacaaatatatacaagggtgtggtaataaagtacaat caaccacctgaggctagaaagccaaaaacaaggtggcgtttctatcctttcaaaggtgacgaggctttaccccttctaca tatacatagacaaagtgcatatctgataggaagggaccgaattgttgtagacattcctgtggatcacccatcctgctcca aacagcatgctgtgttacagtacaggatggtagagtatgagcgtccggatggtagtagtggtcgcagggtcagaccgtac attatagatctggattctgccaatggcacgtttgtgaacaatcaaaagattgaacctcagagatttgtagaactcttaga gaaagatgttgtcaaatttggattcagtacgcgagaatatgtgttgttgcacgaaaaaacggacacatctgaggtggata ccggggcaacatcagactga |
|
Protein
| Protein ID | pfu_aug1.0_55773.1_48839.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_55773.1_48839.t1 MGKSDYSSDEERRHKKKHRRRRPSSESPTRHRSKSDRKRSGSHSPFIKPDPDAVPTRHKIKKERDRDRRDRHDFDPHRPI KREPSDDQRRERRRHDERRMEARRGRGANPFEESSGEFGRTDGQSGERGTNKPKEKPSLELSGKLAEDTNIYKGVVIKYN QPPEARKPKTRWRFYPFKGDEALPLLHIHRQSAYLIGRDRIVVDIPVDHPSCSKQHAVLQYRMVEYERPDGSSGRRVRPY IIDLDSANGTFVNNQKIEPQRFVELLEKDVVKFGFSTREYVLLHEKTDTSEVDTGATSD |
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