Gene
| Gene Model ID | pfu_aug1.0_56110.1_48850 |
|---|---|
| Locus | scaffold56110.1 : 1 ... 4096 : - |
| To GenomeBrowser | scaffold56110.1:1..4096 |
| Genes list of scaffold | scaffold56110.1 |
| Synonym | pfu_aug2.0_386.1_20700 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_56110.1_48850.t1 | 1 | 1 | PNK3P | 1 | 49 | 5.5e-15 | 55.1 | 4.0e-18 | 7.4e-15 | 54.7 |
| pfu_aug1.0_56110.1_48850.t1 | 1 | 1 | AAA_33 | 87 | 119 | 8.2e-09 | 35.4 | 6.1e-12 | 1.1e-08 | 35.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_56110.1_48850.t1 | gi|72139831|ref|XP_791366.1| | PREDICTED: bifunctional polynucleotide phosphatase/kinase [Strongylocentrotus purpuratus] | 3.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| 8-16cell | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_56110.1_48850.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_56110.1_48850.t1 gttgacctgtcaaaaagcacgtatgtgggtgatgcagcaggacgggccaaggaatgggcccccggcaagccaaaggattt ctcttgtagtgataggaagtttgcagctaacattggattaaattttgctactcctgaagaattctttcttggagagacag ccgctccctttgaatggggttcatctgatcctaatacttacgttaaaggagagaaaaaaggtggaaataaggaaacttac catagcaagggtcaagagatggtattgatggtggggccaccagcctctgggaagagcacattcaggaagcggttcttgga accacatggttatgtggcagtcaacagagacaccatgggtactgtggaaaaatgcgtcaag |
|
Protein
| Protein ID | pfu_aug1.0_56110.1_48850.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_56110.1_48850.t1 VDLSKSTYVGDAAGRAKEWAPGKPKDFSCSDRKFAANIGLNFATPEEFFLGETAAPFEWGSSDPNTYVKGEKKGGNKETY HSKGQEMVLMVGPPASGKSTFRKRFLEPHGYVAVNRDTMGTVEKCVK |
|