Gene
| Gene Model ID | pfu_aug1.0_5630.1_09176 |
|---|---|
| Locus | scaffold5630.1 : 6379 ... 12365 : - |
| To GenomeBrowser | scaffold5630.1:6379..12365 |
| Genes list of scaffold | scaffold5630.1 |
| Synonym | pfu_aug2.0_1410.1_01605 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5630.1_09176.t1 | 1 | 1 | RVT_1 | 22 | 139 | 1.1e-09 | 37.9 | 4.4e-13 | 2.2e-09 | 37.0 |
| pfu_aug1.0_5630.1_09176.t1 | 1 | 1 | rve | 409 | 521 | 2.9e-21 | 75.7 | 1.4e-24 | 6.7e-21 | 74.6 |
| pfu_aug1.0_5630.1_09176.t1 | 1 | 1 | TatD_DNase | 1184 | 1387 | 5.4e-32 | 110.9 | 2.0e-35 | 1.0e-31 | 110.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5630.1_09176.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5630.1_09176.t1 atgctcaaagcagatgtaatagagccatctatgtcagagtgggcatcgtcgccggtgctcgtgaggaaacgtgacggtag tgtgagatggtgcgtcgattaccgagctctcaacaaggtaactaagaaagacgtattcccattgccattggtggaggaat gcatggattccttgtcaggtaatctttggtactcaaaattagatgccacatggagatattggcaaattaaagtcaaagat gaagacaaatgtaaaacagccttcaccactaaatacggcttgtaccagtttaagaggatgagctttggattgacgaacgc gccaagcacattttcgagagtgatgaatcttgttttacgaggtttgcattggaggacagttttggcttttcttgatgatg ttttggttctcggtcgtcaatttgatgttaggaccgaccatagcagtttacagtggctaatgaacctcaagaatccgaat ggtcagttagcaagatggttagaggaactcagtcaatattggatagttatccgtcatcgtcccggagttaaacaccagaa tgctgattggctgtccagactctcggataacagtacgtcaacatgccaggagtatagacactgtgaacaaccggctgaat tgccatgtggaggttgtaatcactgccagaagaaacatcaagagtggagtcatttcactgagacggtggacgtggccgtg ccactaacgagtaccatggtaaggcaagttaaaacaacgaaacctatgtcatggatggagggatatacctggaaagaggt caaggactatcaacgagcagatcgagatctaaaattcattctcaactggttatcaacaaaggaaaaaccttcagacagtg aattattcctaagtaatccagcagccaaaaactactggattaataaagaattattcttcctgtgtgaggaaaaagtcctg tggaaaaaggatactgagaatgatgccattagactgattgtcattcctacgacttttaaggaagaaatcattgggctatg ccataatttgccctcgtcaggtcatcaaggtcaagacagaacattaggcagatgtaagcagagattttactggtattcta tgaataaggatactaagaggtttgtcagcgaatgttcaaaatgtaacaggaacaagaaagctaaccgaaaggcaagatgt aagtttacatcatatcacgcaggatcacctatggagcgtatgcatctcgattttctaggtcccttacctgttaccacgaa taacaacacgtgtgtcttgatgatggtggaccagtttaccaaatgggtggagtgtataccattgccaaaccaaacagctg aggttacagtccaagccgcaggtgatcactttttctccagatttggtataccttatcaaatatttacagatagagggtca aattttgaaagttcattgttcaaggaactttgtgagaagctatctatccacaaagcaagaacaacagcgtttagaccatc agcaaatggccaagtagagcgatacaaccggactctaatgaatgctgtacgatgcttttgtagcaggtctccaaagagtt gggatgaatatttaccacaactttcatccgcgttgagatcttctattnttcgcatcatgtcaggtcaagattccagcccg gaaaagagagcctggaaagtggtccagaagaaggacaagggcaaaggaaagggcaagggcaagagttctgacaagggcaa aggaaaggccaaagggacatccggtagccgttacgcggatgttgagaggatgagaactggtgaggagagatgggaggagg tcttgcgtcgagctagcgaggccaatgtgttgttggagcctactgggttttatcgaagaattgccgcattggaccatcat ctgagggaagaatgcgtgcagcgccagtaccaggtagccaagaggttccgtgatgcccgttggatctcgagcatcaggag ggatgcaacgtttgattttccgaacgactggattgaggaacatatcccatccttagacggtaggaaattgcccgtctcca aacctagtaagaagagttctgcaggtgaataccaggctggaccatccagggacttcagattgaaagcaaacctcgaaatg cgggtttatagagcgaacgctgctgctgatgacaacgccgttcccagtgagttgaaggctgaggatccattatattcaga ggacccattacctttagaagatccctcaccactggaagagccaatggatacgtcaggagcagtgcaggaggaagttctgg tggaaacacagcagcctgcagagacggaggtgtcaccgcctaccttggaacggtcggtgagagaggatatggtcattcca tccattgttatcacaccgcctactgaagggtcggtgttggaggagaagtctgttccacggagcaaatctaccggtatcag gatatcacctgtaaaggcaccgcccaaacaggacgtcagaccgaaatccgatgtaagatcaaaatcttcatctgacagat ccagagctgacacgcggtccaaatccaatgacaatgacaatgacaatgacaatgtttatttactaactcaggcacacaaa ggtgctacaagagcaataaataatacaattgcagcaaacgttaaggcaaacaaaaagggggccagccgaccgcaggctgg tgagaagcggaagacaagctccgagggacagaggaatgtaaaaaggtcttccatgtctgcagttacagtcacgttgagag gacagccaccttctcgtggtgcatggagggaaagccactacagccacttcagtcgacatgacgagagctgccctatccct tcttgtaattcacatgacaggcgacttaggagacatgtgattgatagacatttaccagaagctttccggtatgccgtggc aaccagggagaatatcgccatccaagtggacgccctacggtggttgattaggacagtcttaggacctagagcgactctca cggatgctgtcgtctggatgaacaggccaggcagaattccctacggaacctggattggggatgaacaccaggacgtttat gaccaagcctgccatttcctgggtgagtcatccagatgtatgttcaccgcgcatcctatcaattcgcccgctgtcctgat ccattggaggtgtatcctggccctgttgtcaaggtgttcccaggagcaggtgcgtgagttcaggaggttcccgaacgtga gcgatccggttgtattagtggaacctgaggaggagcatagccctaatgtggctatggttgtggacaatgaagagagtgaa gaggaccctggagatatgattcttttagaccaggcagttggctctgatgatgaggaacccgagcagagacaggagcagag agccgtgaatcataagcctttcgccagagttgaggtagccggaggggtcgtagtgtttagtgagccaaaaaattaccctc cagtggatttctccatgaatggaccttggatggttgccgtcggagtccaccctaagcactacgacaccctgacagtagag cgttccattgtgttgaaccagttgttgtcccacccgaaggtagtggcccttggagaatgtggattggacagaacaattcc tccatctaaatggttacggcaggatgaggtgttcaagcggatgctgaatttagcccggccaaatcagcccctcattctgc atctccgtggtccaaaaggtgacatctacggactagacgttaacgcacgctgtaaagaccttatggagaccaggtgtgac aggaaccagaaaatccatgttcattgttttaagggcaccgaggagatggttgagtcatggcttaggaagttcccaaatac ttattttggtatcacagcagctgtccagtcatttgatgatcttcagatcgctggtcttcgggccattccaagagacaagt tgctgttggagacagattcgccttatttccctctaggaggagcagaaatcaacactcctgcctacattggagatgtcgga cactatgtcatgactcatctggatcttcgtccatctgaagtgttccagaggaccctggacaacgcattagcactgtatgg tgctaaccagtag |
|
Protein
| Protein ID | pfu_aug1.0_5630.1_09176.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5630.1_09176.t1 MLKADVIEPSMSEWASSPVLVRKRDGSVRWCVDYRALNKVTKKDVFPLPLVEECMDSLSGNLWYSKLDATWRYWQIKVKD EDKCKTAFTTKYGLYQFKRMSFGLTNAPSTFSRVMNLVLRGLHWRTVLAFLDDVLVLGRQFDVRTDHSSLQWLMNLKNPN GQLARWLEELSQYWIVIRHRPGVKHQNADWLSRLSDNSTSTCQEYRHCEQPAELPCGGCNHCQKKHQEWSHFTETVDVAV PLTSTMVRQVKTTKPMSWMEGYTWKEVKDYQRADRDLKFILNWLSTKEKPSDSELFLSNPAAKNYWINKELFFLCEEKVL WKKDTENDAIRLIVIPTTFKEEIIGLCHNLPSSGHQGQDRTLGRCKQRFYWYSMNKDTKRFVSECSKCNRNKKANRKARC KFTSYHAGSPMERMHLDFLGPLPVTTNNNTCVLMMVDQFTKWVECIPLPNQTAEVTVQAAGDHFFSRFGIPYQIFTDRGS NFESSLFKELCEKLSIHKARTTAFRPSANGQVERYNRTLMNAVRCFCSRSPKSWDEYLPQLSSALRSSIXRIMSGQDSSP EKRAWKVVQKKDKGKGKGKGKSSDKGKGKAKGTSGSRYADVERMRTGEERWEEVLRRASEANVLLEPTGFYRRIAALDHH LREECVQRQYQVAKRFRDARWISSIRRDATFDFPNDWIEEHIPSLDGRKLPVSKPSKKSSAGEYQAGPSRDFRLKANLEM RVYRANAAADDNAVPSELKAEDPLYSEDPLPLEDPSPLEEPMDTSGAVQEEVLVETQQPAETEVSPPTLERSVREDMVIP SIVITPPTEGSVLEEKSVPRSKSTGIRISPVKAPPKQDVRPKSDVRSKSSSDRSRADTRSKSNDNDNDNDNVYLLTQAHK GATRAINNTIAANVKANKKGASRPQAGEKRKTSSEGQRNVKRSSMSAVTVTLRGQPPSRGAWRESHYSHFSRHDESCPIP SCNSHDRRLRRHVIDRHLPEAFRYAVATRENIAIQVDALRWLIRTVLGPRATLTDAVVWMNRPGRIPYGTWIGDEHQDVY DQACHFLGESSRCMFTAHPINSPAVLIHWRCILALLSRCSQEQVREFRRFPNVSDPVVLVEPEEEHSPNVAMVVDNEESE EDPGDMILLDQAVGSDDEEPEQRQEQRAVNHKPFARVEVAGGVVVFSEPKNYPPVDFSMNGPWMVAVGVHPKHYDTLTVE RSIVLNQLLSHPKVVALGECGLDRTIPPSKWLRQDEVFKRMLNLARPNQPLILHLRGPKGDIYGLDVNARCKDLMETRCD RNQKIHVHCFKGTEEMVESWLRKFPNTYFGITAAVQSFDDLQIAGLRAIPRDKLLLETDSPYFPLGGAEINTPAYIGDVG HYVMTHLDLRPSEVFQRTLDNALALYGANQ |
|