Gene
| Gene Model ID | pfu_aug1.0_5657.1_23852 |
|---|---|
| Locus | scaffold5657.1 : 15672 ... 21885 : - |
| To GenomeBrowser | scaffold5657.1:15672..21885 |
| Genes list of scaffold | scaffold5657.1 |
| Synonym | pfu_aug2.0_789.1_31163 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5657.1_23852.t1 | 1 | 1 | 7tm_1 | 70 | 407 | 2.1e-30 | 105.6 | 5.7e-34 | 2.8e-30 | 105.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5657.1_23852.t1 | gi|260841337|ref|XP_002613873.1| | hypothetical protein BRAFLDRAFT_208548 [Branchiostoma floridae] | 4.0e-16 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5657.1_23852.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5657.1_23852.t1 atggatcctatcggcttcaatataagtgacaattttacaggaactttgaggaatgcctcagactttgatagagccctcaa tggatttttacctcctacaaccagggtcgatcctctgcctttgataaccaaactaaacgaggaggaggccagaaggcaaa ttcctctttcaatttttcttggacttgtgtctgtttgtggagtaatcgggaactgtttcgttctgtatatctatggagtt ttatacagagcatctaattcccggatttttatcacttgcttagcagttgtggacttatgcacgtgcattttggcgatccc catagagaccgttacaattcagaatcagtatcaatttgatcagccatgggtatgcaagatttccagatttacaaatgccg cagcgactatttcatcagcaaacattcttttcttaatcgccctggatcgctacagaaagatttgcaaacctctgaagtgg caattcaccaataagaatgccaaactcatgtgtgtaggggccatagctttcagtatgctcctttcatggccttcattgat tctgtacggaataaaatccacggatgtcccgcttagacaagatcttaatggtaccttcaccgaatgttcattggacgacg aattttccaacacaatctacacactcgcgtaccagtttctgtttttactttcgtttttggtcgaggtggttgttatcatt atactatacacttttattggacgcaaagtgaggttctttgcgcataagcacgaacttaggagaggcagctcgtcaaatat aatagacgacaatgatactgaattacaaagaacaaggcgggaaaaactgagggaaattcaaccagacttatcgtcctatg atgaactggacgattccctcggactcaaacgatccgtgacgatgaaaagtcaattcaaatctacagataatattgtagga atggaccaaaacccgaccgaagaaacaactgaccgagaagtacgatccgacggtctttcagtttccggttccgttaattc aaggaacacccttaccaaaacaaatactataaatcacaacagcttgagccatcgtattcacaagaaaaggaaaaacctag ccaagaatactacttatttaatgtttattatttctatagcgtttattgtaacatttgtcccatatttagctatagtgctt ttacgagaaatcatgaaaaacttcgtacagaggatgagcgatagtgaaagaacggcttttcgtttcttcttgcattga |
|
Protein
| Protein ID | pfu_aug1.0_5657.1_23852.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5657.1_23852.t1 MDPIGFNISDNFTGTLRNASDFDRALNGFLPPTTRVDPLPLITKLNEEEARRQIPLSIFLGLVSVCGVIGNCFVLYIYGV LYRASNSRIFITCLAVVDLCTCILAIPIETVTIQNQYQFDQPWVCKISRFTNAAATISSANILFLIALDRYRKICKPLKW QFTNKNAKLMCVGAIAFSMLLSWPSLILYGIKSTDVPLRQDLNGTFTECSLDDEFSNTIYTLAYQFLFLLSFLVEVVVII ILYTFIGRKVRFFAHKHELRRGSSSNIIDDNDTELQRTRREKLREIQPDLSSYDELDDSLGLKRSVTMKSQFKSTDNIVG MDQNPTEETTDREVRSDGLSVSGSVNSRNTLTKTNTINHNSLSHRIHKKRKNLAKNTTYLMFIISIAFIVTFVPYLAIVL LREIMKNFVQRMSDSERTAFRFFLH |
|