Gene
| Gene Model ID | pfu_aug1.0_5668.1_31013 |
|---|---|
| Locus | scaffold5668.1 : 29369 ... 38135 : - |
| To GenomeBrowser | scaffold5668.1:29369..38135 |
| Genes list of scaffold | scaffold5668.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5668.1_31013.t1 | 1 | 1 | Pkinase | 113 | 217 | 2.0e-18 | 66.5 | 7.2e-22 | 2.7e-18 | 66.0 |
| pfu_aug1.0_5668.1_31013.t1 | 1 | 1 | Pkinase_Tyr | 119 | 198 | 1.6e-08 | 33.9 | 6.9e-12 | 2.6e-08 | 33.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5668.1_31013.t1 | gi|348517688|ref|XP_003446365.1| | PREDICTED: serine/threonine-protein kinase LATS1 [Oreochromis niloticus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5668.1_31013.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5668.1_31013.t1 atgttggttggtcaaccgccattttacgcggccacaccggccgaaactcaatttaagtctggcactggtctctttggcta taagtctggcactggtctctttggctataagtctgacactggtctctttggctataagtctgacactggtctctttggtt ataaaaacgtgttgtcatttgcaattcatgattcaatgatacgattgtgtagtgttcacggtctacatccccgacaagat tccatggatgttagttgtgctgttgaaatcgagtgccaatgtgacaaaataagtaaaccattagagaggagacgccaacg acaacgccatcggtgcctcgctcactcactagtggggacgccaaactatatcgcacctgaagtcctcaaacgccaagggt acacatcgtgctgtgattggtggagcgtaggcgtcatattatacgagatgttggttggtcaaccgccattttacgcggcc acaccggccgaaactcaatttaaggtgatacactgggacgagacacttcactttccaccagagccaaagttgtgtaaaga agcttccaacatgattctctcattgtgctgtggtgtcaacgaaagactcggccgaaatggcgcaacggaaattaagaaac atccattctttgcgggactaaattttgaaggtttaagaaagtcgaaggcaccgtacaaacccacaatcagtcatgctacc gacacctcgaatttcgacgattacgacccgaaaattcgaagtgacgatgaagatgatgagacacagaaacccgatcatcc cgtaaacggcaaacatcccgagcatgcgttctttgagttcacattccgtcgtttctttgatgacggtggtcatccctacc cctccatgaaggacgaacccaaagatgccgatgtccctccccaaaaagactccatcgcccccgtctttgtatga |
|
Protein
| Protein ID | pfu_aug1.0_5668.1_31013.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5668.1_31013.t1 MLVGQPPFYAATPAETQFKSGTGLFGYKSGTGLFGYKSDTGLFGYKSDTGLFGYKNVLSFAIHDSMIRLCSVHGLHPRQD SMDVSCAVEIECQCDKISKPLERRRQRQRHRCLAHSLVGTPNYIAPEVLKRQGYTSCCDWWSVGVILYEMLVGQPPFYAA TPAETQFKVIHWDETLHFPPEPKLCKEASNMILSLCCGVNERLGRNGATEIKKHPFFAGLNFEGLRKSKAPYKPTISHAT DTSNFDDYDPKIRSDDEDDETQKPDHPVNGKHPEHAFFEFTFRRFFDDGGHPYPSMKDEPKDADVPPQKDSIAPVFV |
|