Gene
Gene Model ID | pfu_aug1.0_56711.1_48858 |
---|---|
Locus | scaffold56711.1 : 1 ... 3507 : + |
To GenomeBrowser | scaffold56711.1:1..3507 |
Genes list of scaffold | scaffold56711.1 |
Synonym | NA |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | peritrophic matrix like protein |
Description | peritrophic matrix like protein, best hit to BLAST CBY38644.1 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_56711.1_48858.t1 | 2 | 1 | CBM_14 | 2 | 53 | 1.7e-28 | 98.2 | 5.3e-18 | 7.9e-14 | 51.3 |
pfu_aug1.0_56711.1_48858.t1 | 2 | 2 | CBM_14 | 94 | 145 | 1.7e-28 | 98.2 | 1.4e-18 | 2.0e-14 | 53.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_56711.1_48858.t1 | gi|313217576|emb|CBY38644.1| | unnamed protein product [Oikopleura dioica] | 5.0e-13 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
egg-Dshape | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_56711.1_48858.t1 |
---|---|
Definition | - |
>pfu_aug1.0_56711.1_48858.t1 gcttttgtgcgggtaagtcgaatggacttcatgctgaccctaacgactgcgcagcattttacaattgctggaatggagaa ggaagccaggaaaggtgcacgggaggactactgtggaaccaagctgccaagtactgcgactatgactataatgttaattg tgacatctcaggtgctacaaccaagcaaccatcgactgctcgaccttcaaccaatcaaccaccgactgctgccccaacga ccaaaaaaccgtcaactgatggtcccattggagtagtggattgctctacacttccggatggtatgtacaacttcccaggg gactgtaacaaattcatcacctgtaccaatggagtcagttttgacggaacctgccatccctctctccattttaacatgga gatacaaacttgtgactggccggaaaatgcaggatgtcaacgatga |
Protein
Protein ID | pfu_aug1.0_56711.1_48858.t1 |
---|---|
Definition | - |
>pfu_aug1.0_56711.1_48858.t1 FCAGKSNGLHADPNDCAAFYNCWNGEGSQERCTGGLLWNQAAKYCDYDYNVNCDISGATTKQPSTARPSTNQPPTAAPTT KKPSTDGPIGVVDCSTLPDGMYNFPGDCNKFITCTNGVSFDGTCHPSLHFNMEIQTCDWPENAGCQR |