Gene
| Gene Model ID | pfu_aug1.0_56711.1_48858 |
|---|---|
| Locus | scaffold56711.1 : 1 ... 3507 : + |
| To GenomeBrowser | scaffold56711.1:1..3507 |
| Genes list of scaffold | scaffold56711.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | peritrophic matrix like protein |
| Description | peritrophic matrix like protein, best hit to BLAST CBY38644.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_56711.1_48858.t1 | 2 | 1 | CBM_14 | 2 | 53 | 1.7e-28 | 98.2 | 5.3e-18 | 7.9e-14 | 51.3 |
| pfu_aug1.0_56711.1_48858.t1 | 2 | 2 | CBM_14 | 94 | 145 | 1.7e-28 | 98.2 | 1.4e-18 | 2.0e-14 | 53.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_56711.1_48858.t1 | gi|313217576|emb|CBY38644.1| | unnamed protein product [Oikopleura dioica] | 5.0e-13 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_56711.1_48858.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_56711.1_48858.t1 gcttttgtgcgggtaagtcgaatggacttcatgctgaccctaacgactgcgcagcattttacaattgctggaatggagaa ggaagccaggaaaggtgcacgggaggactactgtggaaccaagctgccaagtactgcgactatgactataatgttaattg tgacatctcaggtgctacaaccaagcaaccatcgactgctcgaccttcaaccaatcaaccaccgactgctgccccaacga ccaaaaaaccgtcaactgatggtcccattggagtagtggattgctctacacttccggatggtatgtacaacttcccaggg gactgtaacaaattcatcacctgtaccaatggagtcagttttgacggaacctgccatccctctctccattttaacatgga gatacaaacttgtgactggccggaaaatgcaggatgtcaacgatga |
|
Protein
| Protein ID | pfu_aug1.0_56711.1_48858.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_56711.1_48858.t1 FCAGKSNGLHADPNDCAAFYNCWNGEGSQERCTGGLLWNQAAKYCDYDYNVNCDISGATTKQPSTARPSTNQPPTAAPTT KKPSTDGPIGVVDCSTLPDGMYNFPGDCNKFITCTNGVSFDGTCHPSLHFNMEIQTCDWPENAGCQR |
|