Gene
| Gene Model ID | pfu_aug1.0_5683.1_02051 |
|---|---|
| Locus | scaffold5683.1 : 784 ... 19995 : - |
| To GenomeBrowser | scaffold5683.1:784..19995 |
| Genes list of scaffold | scaffold5683.1 |
| Synonym | pfu_aug2.0_767.1_24386 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | BAMBI-like |
| Description | NCBI BLASTP hit to ref|XP_002589511.1| |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5683.1_02051.t1 | 1 | 1 | BAMBI | 17 | 110 | 7.6e-17 | 61.2 | 2.3e-20 | 1.7e-16 | 60.1 |
| pfu_aug1.0_5683.1_02051.t1 | 1 | 1 | Activin_recp | 22 | 111 | 2.0e-07 | 31.5 | 3.8e-11 | 2.9e-07 | 31.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5683.1_02051.t1 | gi|260788949|ref|XP_002589511.1| | hypothetical protein BRAFLDRAFT_125204 [Branchiostoma floridae] | 2.0e-13 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5683.1_02051.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5683.1_02051.t1 atggaggccctattgcttctagttttacttctctaccacgttccacaaataacaggcgagaagaggtgctactgcaacga gccaaaatgcgtcacttccggttatatgtgtaaatcggccagtgatatgtgttacgtcataaagacttttgagggtgaga cgccaagacatacgcacggatgcgtggacacattggtatcacaaggacagaatctatgtgatagtgctgatagtggactg tacaaggagggcgtgtcaccaaaaggacaagtcatatcgcaagatggaccagtcgtgcgatgttgtaaagaggatatgtg caattataatattgacgtcatcatacacgtccaatcaaatgccagctcaaacgagaagagtgctgacaagaacggtaagc ctgaaaatctgccttcgatagatctttttctattctga |
|
Protein
| Protein ID | pfu_aug1.0_5683.1_02051.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5683.1_02051.t1 MEALLLLVLLLYHVPQITGEKRCYCNEPKCVTSGYMCKSASDMCYVIKTFEGETPRHTHGCVDTLVSQGQNLCDSADSGL YKEGVSPKGQVISQDGPVVRCCKEDMCNYNIDVIIHVQSNASSNEKSADKNGKPENLPSIDLFLF |
|