Gene
Gene Model ID | pfu_aug1.0_5683.1_02051 |
---|---|
Locus | scaffold5683.1 : 784 ... 19995 : - |
To GenomeBrowser | scaffold5683.1:784..19995 |
Genes list of scaffold | scaffold5683.1 |
Synonym | pfu_aug2.0_767.1_24386 |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | BAMBI-like |
Description | NCBI BLASTP hit to ref|XP_002589511.1| |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_5683.1_02051.t1 | 1 | 1 | BAMBI | 17 | 110 | 7.6e-17 | 61.2 | 2.3e-20 | 1.7e-16 | 60.1 |
pfu_aug1.0_5683.1_02051.t1 | 1 | 1 | Activin_recp | 22 | 111 | 2.0e-07 | 31.5 | 3.8e-11 | 2.9e-07 | 31.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_5683.1_02051.t1 | gi|260788949|ref|XP_002589511.1| | hypothetical protein BRAFLDRAFT_125204 [Branchiostoma floridae] | 2.0e-13 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_5683.1_02051.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5683.1_02051.t1 atggaggccctattgcttctagttttacttctctaccacgttccacaaataacaggcgagaagaggtgctactgcaacga gccaaaatgcgtcacttccggttatatgtgtaaatcggccagtgatatgtgttacgtcataaagacttttgagggtgaga cgccaagacatacgcacggatgcgtggacacattggtatcacaaggacagaatctatgtgatagtgctgatagtggactg tacaaggagggcgtgtcaccaaaaggacaagtcatatcgcaagatggaccagtcgtgcgatgttgtaaagaggatatgtg caattataatattgacgtcatcatacacgtccaatcaaatgccagctcaaacgagaagagtgctgacaagaacggtaagc ctgaaaatctgccttcgatagatctttttctattctga |
Protein
Protein ID | pfu_aug1.0_5683.1_02051.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5683.1_02051.t1 MEALLLLVLLLYHVPQITGEKRCYCNEPKCVTSGYMCKSASDMCYVIKTFEGETPRHTHGCVDTLVSQGQNLCDSADSGL YKEGVSPKGQVISQDGPVVRCCKEDMCNYNIDVIIHVQSNASSNEKSADKNGKPENLPSIDLFLF |