Gene
| Gene Model ID | pfu_aug1.0_5688.1_31020 |
|---|---|
| Locus | scaffold5688.1 : 37797 ... 51114 : - |
| To GenomeBrowser | scaffold5688.1:37797..51114 |
| Genes list of scaffold | scaffold5688.1 |
| Synonym | pfu_aug2.0_1218.1_28127 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5688.1_31020.t1 | 3 | 1 | GAS | 35 | 101 | 0.0 | 249.0 | 0.79 | 2400.0 | -2.5 |
| pfu_aug1.0_5688.1_31020.t1 | 3 | 2 | GAS | 103 | 211 | 0.0 | 249.0 | 0.025 | 74.0 | 2.4 |
| pfu_aug1.0_5688.1_31020.t1 | 3 | 3 | GAS | 228 | 428 | 0.0 | 249.0 | 0.0 | 0.0 | 249.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5688.1_31020.t1 | gi|260834855|ref|XP_002612425.1| | hypothetical protein BRAFLDRAFT_263599 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 3 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5688.1_31020.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5688.1_31020.t1 cctcccaaaaagaagaagagtggaaagaaaggaaagaaggggaaaaagtccggaaaggcaaaatcccccactgtcataga tggaattcccacagaagaaatgtcaaaagaacagcttgaggaacacattgcccggctgagagaagaattagacagggaga gagaggagagaaattacttccagctagagcgtgataaggtcaacacattctgggaaatcacaaaacgacagctagaggag aagaaagcggaaattagaaacaaggacagagaaatggaagacgctgaggaaaggcatcagattgaaataaaggtatacaa acagaaggtcaagcacttgttgtttgagcaccaaaataacatctcagatctgaaggcggagaatgtgtgttcccttaaag tcgctcaagatgaacaccggcaagatgagacagaacttagaaaggataaacgggctctcaaagtggaacttaaggaacag gagctttcacatgaagatatcatcaaaaatctcaaaaagactcatgatgaacagattacacagttgagatctgacttcga gagacaagccagagaaatcgaagccaaatatgaaaagaagatgagggcattacgggacgaattagatctccggagaaaga cagagatccatgaaattgaggagaggaagaacggccaaatcaacgagctgatgagaacgcacgaaaaggcgttcacagat atcaagaattactataacgatatcactctcaacaatctgtccctgattaatactctgaaggaacaagtagaggatatgaa gaagaagtatgagttgatggagaaggacagagcagaggttatagcggagaacaagagattggcagagcctctacaacatg ctagggaagaggttgatcagctcagaaaacagctggccaactacgagaaagataaggagacactcaggatgaccaaagcc aggttaaaggtcgcagaggaaaaccagagagccctgaagtgggagcatgaagtattagaacaaagatttgagaagacaca ggacgagagagatgatttatatagaaaatttgttaaagctattcatgaagtacaacagaagagtaatttcaagaacttat tactggaaaagaaactcggagctttggcagatacattggaaaagaaggaagcacagctgaacgaggtgctatccgcctcg aacctcgatcctacggctctcactgtcgtcaccaggaaattggaggatgtcttggattccaagaacagtgctatcaaaga tctacagtacgaactggctagagtatgcaaggctcacaacgatctgctgaggacttatgaagccaagttgacccagtttg gtattcccacagaagaacttggatttaaacctttggagagtacagttgggggccaagccctggggcaaggccctgctgga cttgtgtcggccccaagctaa |
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Protein
| Protein ID | pfu_aug1.0_5688.1_31020.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5688.1_31020.t1 PPKKKKSGKKGKKGKKSGKAKSPTVIDGIPTEEMSKEQLEEHIARLREELDREREERNYFQLERDKVNTFWEITKRQLEE KKAEIRNKDREMEDAEERHQIEIKVYKQKVKHLLFEHQNNISDLKAENVCSLKVAQDEHRQDETELRKDKRALKVELKEQ ELSHEDIIKNLKKTHDEQITQLRSDFERQAREIEAKYEKKMRALRDELDLRRKTEIHEIEERKNGQINELMRTHEKAFTD IKNYYNDITLNNLSLINTLKEQVEDMKKKYELMEKDRAEVIAENKRLAEPLQHAREEVDQLRKQLANYEKDKETLRMTKA RLKVAEENQRALKWEHEVLEQRFEKTQDERDDLYRKFVKAIHEVQQKSNFKNLLLEKKLGALADTLEKKEAQLNEVLSAS NLDPTALTVVTRKLEDVLDSKNSAIKDLQYELARVCKAHNDLLRTYEAKLTQFGIPTEELGFKPLESTVGGQALGQGPAG LVSAPS |
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