Gene
| Gene Model ID | pfu_aug1.0_5691.1_59853 |
|---|---|
| Locus | scaffold5691.1 : 1 ... 22985 : - |
| To GenomeBrowser | scaffold5691.1:1..22985 |
| Genes list of scaffold | scaffold5691.1 |
| Synonym | pfu_aug2.0_1298.1_28189 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5691.1_59853.t1 | 3 | 1 | ABC2_membrane_3 | 68 | 229 | 5.7e-28 | 97.9 | 1.0e-07 | 0.00019 | 20.5 |
| pfu_aug1.0_5691.1_59853.t1 | 2 | 1 | ABC_tran | 331 | 474 | 7.0e-37 | 126.7 | 2.3e-31 | 4.2e-28 | 98.3 |
| pfu_aug1.0_5691.1_59853.t1 | 3 | 1 | AAA_15 | 332 | 385 | 1.5e-06 | 27.5 | 0.00012 | 0.22 | 10.5 |
| pfu_aug1.0_5691.1_59853.t1 | 4 | 1 | AAA_21 | 342 | 369 | 1.4e-20 | 74.4 | 0.00022 | 0.41 | 10.5 |
| pfu_aug1.0_5691.1_59853.t1 | 4 | 2 | AAA_21 | 446 | 502 | 1.4e-20 | 74.4 | 5.3e-09 | 9.8e-06 | 25.7 |
| pfu_aug1.0_5691.1_59853.t1 | 3 | 2 | AAA_15 | 466 | 502 | 1.5e-06 | 27.5 | 0.0074 | 14.0 | 4.6 |
| pfu_aug1.0_5691.1_59853.t1 | 4 | 3 | AAA_21 | 696 | 764 | 1.4e-20 | 74.4 | 0.27 | 500.0 | 0.4 |
| pfu_aug1.0_5691.1_59853.t1 | 3 | 2 | ABC2_membrane_3 | 705 | 1064 | 5.7e-28 | 97.9 | 7.0e-21 | 1.3e-17 | 63.8 |
| pfu_aug1.0_5691.1_59853.t1 | 3 | 3 | ABC2_membrane_3 | 1071 | 1130 | 5.7e-28 | 97.9 | 3.1e-06 | 0.0058 | 15.7 |
| pfu_aug1.0_5691.1_59853.t1 | 2 | 2 | ABC_tran | 1161 | 1220 | 7.0e-37 | 126.7 | 4.4e-09 | 8.1e-06 | 26.1 |
| pfu_aug1.0_5691.1_59853.t1 | 4 | 4 | AAA_21 | 1167 | 1250 | 1.4e-20 | 74.4 | 6.5e-11 | 1.2e-07 | 31.9 |
| pfu_aug1.0_5691.1_59853.t1 | 3 | 3 | AAA_15 | 1213 | 1250 | 1.5e-06 | 27.5 | 0.0008 | 1.5 | 7.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5691.1_59853.t1 | gi|354466892|ref|XP_003495905.1| | PREDICTED: ATP-binding cassette sub-family A member 1 isoform X1 [Cricetulus griseus] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_5691.1_59853.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5691.1_59853.t1 atgtcaagtacaagatccgtcagaatgctactttcactttcaccacaaagtccgtacgtagcaggttttggatgccaggg ccgggtgcatggcaacatccttattatcagtttggatttatctggatccagtggggatattttcgcgaaggggaaatttt ggcgaagttccatgattggcgaaaaacgtgaaaattacccctacgcgaaaatttccatgttcgtacagatgacggtaacc atgtgtgttcttacggtgatgctgaaggtcggtgaagtgttgacctatagtaatccgtacattgtcttcatcgtactgga gatatttgctatcgttaccatttgcttctcgttcctagtgagcacatgttattccaaggccaaagtagcggcagcctgtg ctggcatcgtatatttcctgacatatgtgccatacatgtatgtcgctatcagagaggatgtagctggtgaccaaatctct gccgtcgtcaaagcagccgtgtcgttgttttccaccactgcatttggtctgagtgggaagtactttgcgttctatgagaa ggagggtgtgggtgtacagtggtacaacatacacttatcaccggtagagaacgaccagtttaaccttttgacctgtataa tgatgatggtcatggacaccttcctgtactgtatactgtcatggtatattgaaaacgtcttcccaggatcttatggttta cccaagccttggtacttcctgttcacaaggcagtactggtgtggtggtacgtacaagtcgtccgagatagactgtactca tgtactggacatgtgccgtcggcacggacatacttaccagcttatcggagatgaggaacaggcgtgcggcatggaaccaa gagatgctgaatttgctcggaggtttgagtcggaacccacccatatcccacttggtgtgagcatcgttaatctgaccaag atctataaaacgggaaagaaattggcagtaaacaaacttagcttaaacctgtttgaagaccagataacgtcatttctggg tcacaatggggccggcaaaactactactatgtccatactgacagggttatttccccctacatctggccacgcggtcatat atgataatgacatcagaacagaaatggacgagatccggcagagtttgggaatgtgtccacaacataatgtattatttgat aaacttacagtagaagaacatctgtggttttatgctcgactgaaaggaatgaagggctatgacatcaaacaagaaatgga aacaatgatcgaagatgttggtttaccaaagaagcggcactttaaggtagactgcctgtccggtggtatgcagaggaaat tgtctgttgccatagcttttgtcggcggttcacaaatggttattttggatgaaccaacggctggtgtagatccatatgcc aggcgagctatctgggacttacttatcaaatacaaacatggaagaacaattctattgtctacccatcacatggacgaggc tgatatattaggagacaggatcgctattatttctaacggagaattgaagtgctgtggttcgtcaatcttccttaagaaca cgtttggagacggataccatttatatttggtcaagaaagcttccgaagaagacattaccagtacagatttgtcagatgtg agtgaacaaaacggcaaacgggctgtaaatgagtccttcgtctcacgatgcaaggcctcaaaagtgacagatttcatcaa caagcatgtatctacagcttatcttaaatcggaaagtaacagggagctacattacatcctgccttttgaagaagcaaaga agggaaattttgagaaacttttcagtcaactagattcgaaaatggagcagctacatttaacaagttatggtgtcatggat accaacttggaagaagttttcctgaaggtcacagaggcaggtttagcagaagaagaagaatctgacagtgcctcgtatgc caagtcccgccttgaaggaaaaggctcatatgtactcagcaagaactatttacgtctcaaccaattcagggcgattatcg tcaaaagattccattatatcactaggaattggaaaggactgttttcacagatcattttgccggcattatttatttccgtt gccatgacagtggccctgtcggcacctcaggtcgatgacatgccgcctattgaactttcaccttctcagtatttcaacat cactcaaccgagaggaaattacattccgtttacggacgaaagtcagggaaccatgaacaagccgacattctcaaaagatg ccggtccaaatcggatgatgaatacatttcgtcttgcttcgggtgttggtgctacgtgcgttttaagatcggcatacaac agtacatttgatgtagattggattcatagtgctaattatagtgataaaaattttgagttgttgcggagatattatagtga caaatgcggtagtgtgtttgtttccgggatccatattgccagctatacaccacaagtcccttttgttcatcccaaaaatc taaaaaacggcacctctatcaaaccagtgcctacaaaccctcaaaacaagaagccttactaccctacgtgnccggaattc cgagtcgtctctaaggatatattacagaacatcacagggagcaagacccaggatttcttactatatacacaggatcctat atacagacttcataggtatgggggtttatcgtttggtatggtcagagataatattccggatgattttggcaaagacgccc ctccactgttcaggaaaatagccgtcaaaactgttgctaaggcctggtataaccataaaggataccatgcgatgccagtc tatctgaacactctcaacaatgctatacttagagctaaccttgaccctgccacgaaaggaaaccctgccgcctatggaat cactgccacaaatcatcccatgaaagaaacaaacaatcagctgaatgaagattacattctccaaggttctgatgtactca tctctatcttcatcatcgtggccatgtcgtttgtgccggccagttttgtcgtcttcctcgtgtatgagaggtcgatcaaa tccaagcacctacagtttgtgagtggcatcgatccagtcatgtactggttagccaactatgtatgggatattgagcccag cgccgcctacattagccttatcgtcgttaacctatttaccggcatcacgtgtatcgtatcaagcttcctgttagagattt tctcgtatgaccatgaccttaagaaggtcaatgacatcataaaagatgtgttcctgatgtttcccaactactgccttgga cgagggttgatggatatagcttacaatgaatacaggaatgaattttattataaaactgtttatgatgaggacatagatgt ggctggagagaggaagagagtcctcagaggttctggaaggaatgacctgctgaggatacagaacctcacaaaagttgtag agtgggctttaaccaaactaggcctgaccaagtatgccgacaaaccatcggggacgtacagcgggggaaacaagaggaaa ctatccactgctatagccttagtgggacatccacctcttatatttatggatgagcccaccaccggcatggatccacattc caggcgcttcctctgggatctcatacttgatctcgtcaaaaatggccgctccgtcattctcacttcacatag |
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Protein
| Protein ID | pfu_aug1.0_5691.1_59853.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5691.1_59853.t1 MSSTRSVRMLLSLSPQSPYVAGFGCQGRVHGNILIISLDLSGSSGDIFAKGKFWRSSMIGEKRENYPYAKISMFVQMTVT MCVLTVMLKVGEVLTYSNPYIVFIVLEIFAIVTICFSFLVSTCYSKAKVAAACAGIVYFLTYVPYMYVAIREDVAGDQIS AVVKAAVSLFSTTAFGLSGKYFAFYEKEGVGVQWYNIHLSPVENDQFNLLTCIMMMVMDTFLYCILSWYIENVFPGSYGL PKPWYFLFTRQYWCGGTYKSSEIDCTHVLDMCRRHGHTYQLIGDEEQACGMEPRDAEFARRFESEPTHIPLGVSIVNLTK IYKTGKKLAVNKLSLNLFEDQITSFLGHNGAGKTTTMSILTGLFPPTSGHAVIYDNDIRTEMDEIRQSLGMCPQHNVLFD KLTVEEHLWFYARLKGMKGYDIKQEMETMIEDVGLPKKRHFKVDCLSGGMQRKLSVAIAFVGGSQMVILDEPTAGVDPYA RRAIWDLLIKYKHGRTILLSTHHMDEADILGDRIAIISNGELKCCGSSIFLKNTFGDGYHLYLVKKASEEDITSTDLSDV SEQNGKRAVNESFVSRCKASKVTDFINKHVSTAYLKSESNRELHYILPFEEAKKGNFEKLFSQLDSKMEQLHLTSYGVMD TNLEEVFLKVTEAGLAEEEESDSASYAKSRLEGKGSYVLSKNYLRLNQFRAIIVKRFHYITRNWKGLFSQIILPALFISV AMTVALSAPQVDDMPPIELSPSQYFNITQPRGNYIPFTDESQGTMNKPTFSKDAGPNRMMNTFRLASGVGATCVLRSAYN STFDVDWIHSANYSDKNFELLRRYYSDKCGSVFVSGIHIASYTPQVPFVHPKNLKNGTSIKPVPTNPQNKKPYYPTXPEF RVVSKDILQNITGSKTQDFLLYTQDPIYRLHRYGGLSFGMVRDNIPDDFGKDAPPLFRKIAVKTVAKAWYNHKGYHAMPV YLNTLNNAILRANLDPATKGNPAAYGITATNHPMKETNNQLNEDYILQGSDVLISIFIIVAMSFVPASFVVFLVYERSIK SKHLQFVSGIDPVMYWLANYVWDIEPSAAYISLIVVNLFTGITCIVSSFLLEIFSYDHDLKKVNDIIKDVFLMFPNYCLG RGLMDIAYNEYRNEFYYKTVYDEDIDVAGERKRVLRGSGRNDLLRIQNLTKVVEWALTKLGLTKYADKPSGTYSGGNKRK LSTAIALVGHPPLIFMDEPTTGMDPHSRRFLWDLILDLVKNGRSVILTSH |
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