Gene
| Gene Model ID | pfu_aug1.0_57084.1_34611 |
|---|---|
| Locus | scaffold57084.1 : 1619 ... 3785 : + |
| To GenomeBrowser | scaffold57084.1:1619..3785 |
| Genes list of scaffold | scaffold57084.1 |
| Synonym | pfu_aug2.0_205.1_17120 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_57084.1_34611.t1 | 2 | 1 | zf-B_box | 10 | 50 | 3.3e-10 | 39.6 | 2.7e-08 | 8.0e-05 | 22.4 |
| pfu_aug1.0_57084.1_34611.t1 | 2 | 2 | zf-B_box | 61 | 98 | 3.3e-10 | 39.6 | 4.5e-11 | 1.3e-07 | 31.3 |
| pfu_aug1.0_57084.1_34611.t1 | 5 | 1 | NHL | 323 | 343 | 7.1e-08 | 32.0 | 0.0011 | 3.2 | 7.8 |
| pfu_aug1.0_57084.1_34611.t1 | 5 | 2 | NHL | 360 | 375 | 7.1e-08 | 32.0 | 0.025 | 75.0 | 3.5 |
| pfu_aug1.0_57084.1_34611.t1 | 5 | 3 | NHL | 411 | 433 | 7.1e-08 | 32.0 | 0.31 | 930.0 | 0.1 |
| pfu_aug1.0_57084.1_34611.t1 | 5 | 4 | NHL | 456 | 477 | 7.1e-08 | 32.0 | 0.0045 | 13.0 | 5.9 |
| pfu_aug1.0_57084.1_34611.t1 | 5 | 5 | NHL | 494 | 520 | 7.1e-08 | 32.0 | 3.0e-05 | 0.088 | 12.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_57084.1_34611.t1 | gi|260824631|ref|XP_002607271.1| | hypothetical protein BRAFLDRAFT_88219 [Branchiostoma floridae] | 3.0e-19 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_57084.1_34611.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_57084.1_34611.t1 atggctgccttgtatcaatggtcagtaccttgtattatatgtgaagatcctgtggagttccattgtaatacatgtgggga tgttctctgctcaaggtgcaaggacaatcatctcaaaagcaatgcaacgaagctgcatgatatcgtgccttactcacaac gctctatccctgtcaaaaacactaatgaatgcgagaaacaccatggtcagatatttaatgcatggtgtaaaacctgtaac gaacccgtttgtacagaatgcatgttgtctgcagcacacaacagacataattttggaaaattggaagaaaaaattatgaa aaagagaaaagaattacaaagagatttcgatcttcaatccagccttttagttcaacatgaatccaagttatattctgtaa aacggatgaggggttcatacgaaaaagaaatacaggttttatgtctagggatcggtgctcaagctgacaaaatttgcaaa gaagtcagggtcattgagaagaaaaccatgcagaaactagaaggtcttggtacagatcatcaatcaaaatttattcagtg tgagtctaccatcaaagaagatatcaaaagatgcaaaaatgaattgaaagaaatagaagatgtgctaaggtcgaatgact taacaaaaatattaacacataaatcgaaacttggagagataagtacagatttgacagagaatttaaacacccgtcctgtt ttcaagccaggagaaatatcagttaatgtgttggagagagtatttggaagtctgtcagtgatgggaagtgaatctgcttc agtagcaatatctaaattgtcaatagaaaaggattctgatcctgctatagtatgtgtggatgcaaatcatgcctgggttg aaactagtgacatgaccctcaagctaattaccagggacggaagtgtaaagaacatcatccacttcgactttatcttgcca gtcatgaccattgatgcggaaggtgatctgctgttgtgtgattttagcaacaaatgcatcaggtgtctacctaaaggaag caacgaaatgtctattctcttccatacagagagtccaccccataatatatgctgcttgtcgtctggtgatatcttagttt ccagtacctctgaacggagaatgacaatttacaacagaagaggtcatgtcgtcaaggaagttgacaacaaacttttccat tatccaatgacagtgacacagcacaaggacactaaactgttgtatgttagcgacaaaacagggatgcaactctcggcatc aggtagagtcgtctgttttgggacgaacaacaaaaagatgtttcagtacacttgtagggaaaattctctcgactttactc cttgctgtgtatgtgttgatggtcgtggtttcatactcgtttccaattttaagagtaactctgtccacatcctgagccaa gagctcaagttcctgcagtatctgacgccaaagcaagctttgaccagacctgtctgtgttgatgtggatggcgacggaca tgcttgggttggagaatttcaaactcatgcaatacaaattgtgaaataccatgtgaaataa |
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Protein
| Protein ID | pfu_aug1.0_57084.1_34611.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_57084.1_34611.t1 MAALYQWSVPCIICEDPVEFHCNTCGDVLCSRCKDNHLKSNATKLHDIVPYSQRSIPVKNTNECEKHHGQIFNAWCKTCN EPVCTECMLSAAHNRHNFGKLEEKIMKKRKELQRDFDLQSSLLVQHESKLYSVKRMRGSYEKEIQVLCLGIGAQADKICK EVRVIEKKTMQKLEGLGTDHQSKFIQCESTIKEDIKRCKNELKEIEDVLRSNDLTKILTHKSKLGEISTDLTENLNTRPV FKPGEISVNVLERVFGSLSVMGSESASVAISKLSIEKDSDPAIVCVDANHAWVETSDMTLKLITRDGSVKNIIHFDFILP VMTIDAEGDLLLCDFSNKCIRCLPKGSNEMSILFHTESPPHNICCLSSGDILVSSTSERRMTIYNRRGHVVKEVDNKLFH YPMTVTQHKDTKLLYVSDKTGMQLSASGRVVCFGTNNKKMFQYTCRENSLDFTPCCVCVDGRGFILVSNFKSNSVHILSQ ELKFLQYLTPKQALTRPVCVDVDGDGHAWVGEFQTHAIQIVKYHVK |
|