Gene
| Gene Model ID | pfu_aug1.0_5716.1_23881 |
|---|---|
| Locus | scaffold5716.1 : 23016 ... 29942 : + |
| To GenomeBrowser | scaffold5716.1:23016..29942 |
| Genes list of scaffold | scaffold5716.1 |
| Synonym | pfu_aug2.0_556.1_20906 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5716.1_23881.t1 | 1 | 1 | MR_MLE_C | 38 | 148 | 5.0e-18 | 65.0 | 1.9e-21 | 9.1e-18 | 64.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5716.1_23881.t1 | gi|260824237|ref|XP_002607074.1| | hypothetical protein BRAFLDRAFT_118681 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5716.1_23881.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5716.1_23881.t1 atggctgagtataaaatactatttatagaggaacctaccaatcctgatgatgtcatgggacatgctgccatagcagaggc tttgaagcctgtaggtattggtgtggccacaggagagatgtgtcagaacagagttatgtttaaacagttcctaaaggcgg gggccatgcagtactgtcagatagatgcatgtcgactgggcggggtcaatgaatgtgtggctgtaatactgttagctgcc aaatacaaagttcctgtatgtccccatgctggtggtgtggcactatgtgagctggttcagcacctgtccatgtttgactt tgtggcagtgtcaggatcaatggataacagaatgatagaatttgcagaccatttacatgagcacatgttggctccagtag tgctgaaaggtggcagataccaagctccacagactccaggatatgttgttggtatgcatgataaatctctcgctgatttt gaatatccaaatggtgccgagtggcagaggatgttcaaggagggacttttccagcccgagtaa |
|
Protein
| Protein ID | pfu_aug1.0_5716.1_23881.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5716.1_23881.t1 MAEYKILFIEEPTNPDDVMGHAAIAEALKPVGIGVATGEMCQNRVMFKQFLKAGAMQYCQIDACRLGGVNECVAVILLAA KYKVPVCPHAGGVALCELVQHLSMFDFVAVSGSMDNRMIEFADHLHEHMLAPVVLKGGRYQAPQTPGYVVGMHDKSLADF EYPNGAEWQRMFKEGLFQPE |
|