Gene
| Gene Model ID | pfu_aug1.0_5716.1_23882 |
|---|---|
| Locus | scaffold5716.1 : 30482 ... 39295 : - |
| To GenomeBrowser | scaffold5716.1:30482..39295 |
| Genes list of scaffold | scaffold5716.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5716.1_23882.t1 | 3 | 1 | Strumpellin | 1 | 151 | 0.0 | 569.4 | 0.0 | 0.0 | 226.4 |
| pfu_aug1.0_5716.1_23882.t1 | 3 | 2 | Strumpellin | 151 | 282 | 0.0 | 569.4 | 0.0 | 0.0 | 187.3 |
| pfu_aug1.0_5716.1_23882.t1 | 3 | 3 | Strumpellin | 282 | 436 | 0.0 | 569.4 | 0.0 | 0.0 | 163.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5716.1_23882.t1 | gi|47224075|emb|CAG12904.1| | unnamed protein product, partial [Tetraodon nigroviridis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5716.1_23882.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5716.1_23882.t1 atgagcaagcagatcgggtcgttgaattacgatgattctacgtcagccggcaggaagattgtacagttgatacaggctct ggaagaggttcaagagttccatcagttagagagtaatctacaagtgaagcagtttttggcggacactcgtaaatatttac atcagatgatacgtaccatcaatatcaaagaggaagttctcatcaccatacaaattgttggagatctgtcatacgcatgg gatatcattgatagctatacatcatacatgcaacaaggaatcaaaagggatccctcactggtcatcaaactcagagcaac ttttctgaagatggcgtcagctctggaccttccattaatgaggattaaccaggccatgagtcctgacctgatgagtgtat cccagtattactcaggggaacttgtagcttatgtcaggaaagtgttacaggtgagtgagctgctacccaagctccatgag ttaggaagtaggatggatggcttccgacggtcgtttgagtacatacaggattacgttaacatctacggactgaagatctg gcaggaggaagtgtccaggatcatcaactataatgtagagcaggagtgtaacagcttcctcaggactaaggtacaagact ggcagagtatataccagtctacagctatacctataccaaggtatgcccctgttgatgagagtgtcaactttatcggtaga ctggcaagggagataatcaggataacagatccaagggtcacttcatacatagatcagatgaaagcatggtatgatgttaa aacaaaacaagagcaagtgaacagaaccctgtttcaaaggattcaggttggccagatgcagttactgagaaagcagattg cccatgagctgaatacttcctgtaaatttgattccaaagtctttgccaatgccttacaaaccatgaacaatgccctgcta gcagatatagaaagacattaccaggatcctagtttaccgtaccctaaagaagaaaacccactaatgtttgagttgacagc ttatctagaatcagcgggctttcatgatcctttctctaagatttacattacaactaaacgcctgcctttctttgccctgt tcaacttcctcatagttatatcaaacctgccaaaactagtctacagcaagtcaatcagtgggatggtagccaagaagccc caggaccccctggattccccaccgtttgtggctgggtgtattaccgtactcaaacagttccactcggagtacacggacgt cttcctagcttacctcgggcagtacatacgatctgtagtggaagttctaccaggaaacaagagccaagatttaccacaag acgtgctgaacacattggtattcctagaagatttcatcaactatagtggcctaacacgaaaggttgtagaggcacatgta cccatgtatctatttgatgaattcagaagtcagtttgcccagtaa |
|
Protein
| Protein ID | pfu_aug1.0_5716.1_23882.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5716.1_23882.t1 MSKQIGSLNYDDSTSAGRKIVQLIQALEEVQEFHQLESNLQVKQFLADTRKYLHQMIRTINIKEEVLITIQIVGDLSYAW DIIDSYTSYMQQGIKRDPSLVIKLRATFLKMASALDLPLMRINQAMSPDLMSVSQYYSGELVAYVRKVLQVSELLPKLHE LGSRMDGFRRSFEYIQDYVNIYGLKIWQEEVSRIINYNVEQECNSFLRTKVQDWQSIYQSTAIPIPRYAPVDESVNFIGR LAREIIRITDPRVTSYIDQMKAWYDVKTKQEQVNRTLFQRIQVGQMQLLRKQIAHELNTSCKFDSKVFANALQTMNNALL ADIERHYQDPSLPYPKEENPLMFELTAYLESAGFHDPFSKIYITTKRLPFFALFNFLIVISNLPKLVYSKSISGMVAKKP QDPLDSPPFVAGCITVLKQFHSEYTDVFLAYLGQYIRSVVEVLPGNKSQDLPQDVLNTLVFLEDFINYSGLTRKVVEAHV PMYLFDEFRSQFAQ |
|