Gene
| Gene Model ID | pfu_aug1.0_5722.1_16740 |
|---|---|
| Locus | scaffold5722.1 : 901 ... 28805 : - |
| To GenomeBrowser | scaffold5722.1:901..28805 |
| Genes list of scaffold | scaffold5722.1 |
| Synonym | pfu_aug2.0_165.1_17045 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5722.1_16740.t1 | 2 | 1 | tRNA-synt_2c | 9 | 276 | 0.0 | 404.3 | 0.0 | 0.0 | 388.1 |
| pfu_aug1.0_5722.1_16740.t1 | 2 | 2 | tRNA-synt_2c | 287 | 324 | 0.0 | 404.3 | 9.7e-07 | 0.0072 | 14.6 |
| pfu_aug1.0_5722.1_16740.t1 | 2 | 1 | DHHA1 | 305 | 328 | 6.6e-10 | 38.5 | 0.71 | 5200.0 | -2.8 |
| pfu_aug1.0_5722.1_16740.t1 | 2 | 2 | DHHA1 | 341 | 408 | 6.6e-10 | 38.5 | 3.2e-13 | 2.3e-09 | 36.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5722.1_16740.t1 | gi|91084029|ref|XP_966465.1| | PREDICTED: alanine--tRNA ligase, cytoplasmic [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_5722.1_16740.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5722.1_16740.t1 atggattgtggtttaactgggaaccaaatccgacagctctttgttgatttcttcaaggagaagaagcacacatatgtcca ctcaaactctgttgtaccactggacgatcctacacttctcttcacaaatgcagggatgaaccagtttaagcccatctttt tgggtacagtggatccaaatagtgacatggcaaagcttgagcgtgcagtcaattcacagaaatgtattcgagcaggtgga aaacataacgacttggacgatgtcggcaaagacgtttatcatcatacattcttcgagatgttaggaaattggtcgtttgg agattattacaaatctgagtgctgtgcctgggcctgggagttcctgacacagagagtcggcatgcctaaagacagattat atgtcacatactttggtggaaatgaaaaatttggacttgctccagatgatgaaactaagaaaatatggcttggtctgggg gttgcggaggatcgagtgctgccttttggtatgaaagataatttctgggagatgggcgagacaggaccttgtggtccatg cacagaaatccactttgataaaataggcggtagaaatgccgcacacttggtaaatctggatgaccctgatgtcatagaaa tctggaaccttgtcttcattcagtttaacagagaatcagagagtgagctgaaggacctgcctcgtaaacactgtgattgt ggtatgggtttagaacgtctggtatcggtgatgcaggggaaaatgtcaaactacgactcagatatcttcacacctctctt tgatgctattcaaaagggagaggcatttccagaaataacaaaggacccagacttggacacagaatttaatgtgaagaatg tgttggttcgtgctggttacgtcctacatgttggtgagatcgagggtacattacgagtcggggatgtcgtgcaattgtat gtcgatgaggcccttgatgctgcaatgaaacaatacaagaatctcagtccagacactgctgccatattttttactgtgga ccgagatgctggtaaaattatatgtatgagctgtacacccaagtccagtatatctaatggtcttactgccaatgcctggg tatcagaggttgtaccagttataaatggtaaaggaggagggaaggatgcctccgcacaggctaccggcactaatgtggac aaactggaggaagctcttaacattgccatcaaattcgctgagatgaagttatcatga |
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Protein
| Protein ID | pfu_aug1.0_5722.1_16740.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5722.1_16740.t1 MDCGLTGNQIRQLFVDFFKEKKHTYVHSNSVVPLDDPTLLFTNAGMNQFKPIFLGTVDPNSDMAKLERAVNSQKCIRAGG KHNDLDDVGKDVYHHTFFEMLGNWSFGDYYKSECCAWAWEFLTQRVGMPKDRLYVTYFGGNEKFGLAPDDETKKIWLGLG VAEDRVLPFGMKDNFWEMGETGPCGPCTEIHFDKIGGRNAAHLVNLDDPDVIEIWNLVFIQFNRESESELKDLPRKHCDC GMGLERLVSVMQGKMSNYDSDIFTPLFDAIQKGEAFPEITKDPDLDTEFNVKNVLVRAGYVLHVGEIEGTLRVGDVVQLY VDEALDAAMKQYKNLSPDTAAIFFTVDRDAGKIICMSCTPKSSISNGLTANAWVSEVVPVINGKGGGKDASAQATGTNVD KLEEALNIAIKFAEMKLS |
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