Gene
| Gene Model ID | pfu_aug1.0_57367.1_48874 |
|---|---|
| Locus | scaffold57367.1 : 1 ... 1356 : + |
| To GenomeBrowser | scaffold57367.1:1..1356 |
| Genes list of scaffold | scaffold57367.1 |
| Synonym | pfu_aug2.0_14.1_13381 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Beta3 |
| Description | Best hit to BAG57349 basic helix-loop-helix family, member e22 with 3e-42 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_57367.1_48874.t1 | 2 | 1 | HLH | 112 | 163 | 3.6e-15 | 55.4 | 3.9e-19 | 5.9e-15 | 54.7 |
| pfu_aug1.0_57367.1_48874.t1 | 2 | 2 | HLH | 166 | 175 | 3.6e-15 | 55.4 | 0.16 | 2400.0 | -1.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_57367.1_48874.t1 | gi|31419015|gb|AAH53312.1| | Basic helix-loop-helix family, member e22 [Danio rerio] | 2.0e-34 |
Transcript
| Transcript ID | pfu_aug1.0_57367.1_48874.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_57367.1_48874.t1 gctctgatagtaacgaaaatgcccaaaacacttacgaaaatttcagtggaggagcttaccccacaaactatcgtccgtct gtacattctgatatagcaagtgatgggaaacgagataattacggtgcagaaaatatccaattaaaacaaaatctggagga ttctgaaaatttatatagaaatataaacgttgacggaaacagcagcgacgacagtagtgatactaacctctcagacgggt accgccatcaatgtgacggcttacaggaggcgtacggtgaacacgagttggagtccaagcacaaacataaaagaaacaaa ggcgaaaaggtggtacgcctgaacattaacgccagggaacgcagacgcatgcacgacctaaacgacgccctggacgagtt aaggtcagtgataccctacgcccatagtccctccgtgcgtaaactctccaaaatcgccaccctccttctagctaaaaact acatactgatgcaggccaacgctctggaagaaatgaggcgtatgatagcctacatgaacaccgcgcaggccactacgccg tgctttgagccgttctccgcgtatggccgacttcagggtatgcaggccagtatgacgtcagacagtgaacacaactcgaa caagtgcgcgccgctatttggtatgcagaaaagtgacccttcaagaaagtga |
|
Protein
| Protein ID | pfu_aug1.0_57367.1_48874.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_57367.1_48874.t1 SDSNENAQNTYENFSGGAYPTNYRPSVHSDIASDGKRDNYGAENIQLKQNLEDSENLYRNINVDGNSSDDSSDTNLSDGY RHQCDGLQEAYGEHELESKHKHKRNKGEKVVRLNINARERRRMHDLNDALDELRSVIPYAHSPSVRKLSKIATLLLAKNY ILMQANALEEMRRMIAYMNTAQATTPCFEPFSAYGRLQGMQASMTSDSEHNSNKCAPLFGMQKSDPSRK |
|