Gene
| Gene Model ID | pfu_aug1.0_5737.1_31027 |
|---|---|
| Locus | scaffold5737.1 : 10756 ... 18471 : + |
| To GenomeBrowser | scaffold5737.1:10756..18471 |
| Genes list of scaffold | scaffold5737.1 |
| Synonym | pfu_aug2.0_1326.1_21552 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5737.1_31027.t1 | 1 | 1 | Aldo_ket_red | 57 | 205 | 1.6e-36 | 125.5 | 1.4e-40 | 2.1e-36 | 125.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5737.1_31027.t1 | gi|260822040|ref|XP_002606411.1| | hypothetical protein BRAFLDRAFT_67662 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5737.1_31027.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5737.1_31027.t1 atgacttacgaccaaacttaccaaagtcgaggctttgtaaaacggccaccaggtgcctggggagagtcagcgtctcctga ttgcatgcaacacccatcgaaacagttgcatgaaaacttgtcaaattcggtgattgtctcgataacgcttcgccgacgct atatttcaggtgcgtcatctcttggtagcgtcttccgtgagacagatgacactgagtcacaaagcgtcgttcatacggct ctgaaaatgggtataaactatttagatacagcgccttggtacggacacggcaaatccgagaccgttttaggaaaggcact tcaaggtgttccaagggaatcatattatgtagcaacaaaagtcggcagatatttgccagaagtagagaaaatgtttgact tccgggcagagagaaccttacagagcgttgatgagagtttacagagacttggtctggattcagttgacattatacaggtt cacgatatggagtttgcaccatccctagatatcatcataaacgagactttaccggcgctacaaaaggtcaaggacagcgg aaaggccaaatttattggtataacaggctatcccttgcagaattttaagtatatggaacctttaacaaataggcactggg agggagtagaagtagctcattactggcagcaaatcaaaggcaacgaacccaaggaagaatttgttctgggatag |
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Protein
| Protein ID | pfu_aug1.0_5737.1_31027.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5737.1_31027.t1 MTYDQTYQSRGFVKRPPGAWGESASPDCMQHPSKQLHENLSNSVIVSITLRRRYISGASSLGSVFRETDDTESQSVVHTA LKMGINYLDTAPWYGHGKSETVLGKALQGVPRESYYVATKVGRYLPEVEKMFDFRAERTLQSVDESLQRLGLDSVDIIQV HDMEFAPSLDIIINETLPALQKVKDSGKAKFIGITGYPLQNFKYMEPLTNRHWEGVEVAHYWQQIKGNEPKEEFVLG |
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