Gene
| Gene Model ID | pfu_aug1.0_5748.1_52601 |
|---|---|
| Locus | scaffold5748.1 : 22389 ... 27025 : - |
| To GenomeBrowser | scaffold5748.1:22389..27025 |
| Genes list of scaffold | scaffold5748.1 |
| Synonym | pfu_aug2.0_890.1_01228 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5748.1_52601.t1 | 8 | 1 | LRR_8 | 69 | 127 | 1.6e-28 | 98.2 | 9.3e-08 | 0.00027 | 20.6 |
| pfu_aug1.0_5748.1_52601.t1 | 5 | 1 | LRR_5 | 89 | 162 | 2.8e-07 | 30.2 | 0.00024 | 0.71 | 9.5 |
| pfu_aug1.0_5748.1_52601.t1 | 5 | 2 | LRR_5 | 90 | 201 | 2.8e-07 | 30.2 | 2.7e-06 | 0.0081 | 15.8 |
| pfu_aug1.0_5748.1_52601.t1 | 9 | 1 | LRR_4 | 94 | 129 | 1.9e-16 | 59.2 | 3.4e-06 | 0.01 | 15.4 |
| pfu_aug1.0_5748.1_52601.t1 | 11 | 1 | LRR_1 | 94 | 113 | 4.1e-07 | 29.1 | 0.056 | 170.0 | 2.9 |
| pfu_aug1.0_5748.1_52601.t1 | 9 | 2 | LRR_4 | 115 | 156 | 1.9e-16 | 59.2 | 2.7e-06 | 0.0081 | 15.7 |
| pfu_aug1.0_5748.1_52601.t1 | 11 | 2 | LRR_1 | 116 | 134 | 4.1e-07 | 29.1 | 0.017 | 49.0 | 4.5 |
| pfu_aug1.0_5748.1_52601.t1 | 5 | 3 | LRR_5 | 142 | 225 | 2.8e-07 | 30.2 | 0.00013 | 0.4 | 10.3 |
| pfu_aug1.0_5748.1_52601.t1 | 8 | 2 | LRR_8 | 144 | 165 | 1.6e-28 | 98.2 | 0.00098 | 2.9 | 7.7 |
| pfu_aug1.0_5748.1_52601.t1 | 8 | 3 | LRR_8 | 144 | 201 | 1.6e-28 | 98.2 | 5.9e-09 | 1.7e-05 | 24.4 |
| pfu_aug1.0_5748.1_52601.t1 | 11 | 3 | LRR_1 | 144 | 165 | 4.1e-07 | 29.1 | 0.00046 | 1.4 | 9.2 |
| pfu_aug1.0_5748.1_52601.t1 | 8 | 4 | LRR_8 | 167 | 207 | 1.6e-28 | 98.2 | 9.1e-10 | 2.7e-06 | 27.0 |
| pfu_aug1.0_5748.1_52601.t1 | 9 | 3 | LRR_4 | 169 | 209 | 1.9e-16 | 59.2 | 2.0e-06 | 0.0059 | 16.2 |
| pfu_aug1.0_5748.1_52601.t1 | 11 | 4 | LRR_1 | 169 | 186 | 4.1e-07 | 29.1 | 0.015 | 46.0 | 4.6 |
| pfu_aug1.0_5748.1_52601.t1 | 11 | 5 | LRR_1 | 192 | 204 | 4.1e-07 | 29.1 | 0.13 | 390.0 | 1.7 |
| pfu_aug1.0_5748.1_52601.t1 | 8 | 5 | LRR_8 | 217 | 273 | 1.6e-28 | 98.2 | 0.00083 | 2.5 | 7.9 |
| pfu_aug1.0_5748.1_52601.t1 | 9 | 4 | LRR_4 | 218 | 232 | 1.9e-16 | 59.2 | 0.23 | 680.0 | 0.0 |
| pfu_aug1.0_5748.1_52601.t1 | 9 | 5 | LRR_4 | 245 | 275 | 1.9e-16 | 59.2 | 2.1e-06 | 0.0062 | 16.1 |
| pfu_aug1.0_5748.1_52601.t1 | 11 | 6 | LRR_1 | 245 | 268 | 4.1e-07 | 29.1 | 0.0026 | 7.7 | 6.9 |
| pfu_aug1.0_5748.1_52601.t1 | 8 | 6 | LRR_8 | 291 | 324 | 1.6e-28 | 98.2 | 6.2e-05 | 0.18 | 11.5 |
| pfu_aug1.0_5748.1_52601.t1 | 9 | 6 | LRR_4 | 309 | 325 | 1.9e-16 | 59.2 | 0.011 | 33.0 | 4.2 |
| pfu_aug1.0_5748.1_52601.t1 | 11 | 7 | LRR_1 | 314 | 331 | 4.1e-07 | 29.1 | 0.1 | 300.0 | 2.1 |
| pfu_aug1.0_5748.1_52601.t1 | 5 | 4 | LRR_5 | 337 | 407 | 2.8e-07 | 30.2 | 8.5e-08 | 0.00025 | 20.7 |
| pfu_aug1.0_5748.1_52601.t1 | 8 | 7 | LRR_8 | 343 | 400 | 1.6e-28 | 98.2 | 4.4e-14 | 1.3e-10 | 40.8 |
| pfu_aug1.0_5748.1_52601.t1 | 9 | 7 | LRR_4 | 343 | 381 | 1.9e-16 | 59.2 | 2.6e-08 | 7.6e-05 | 22.2 |
| pfu_aug1.0_5748.1_52601.t1 | 11 | 8 | LRR_1 | 343 | 363 | 4.1e-07 | 29.1 | 0.41 | 1200.0 | 0.2 |
| pfu_aug1.0_5748.1_52601.t1 | 9 | 8 | LRR_4 | 364 | 401 | 1.9e-16 | 59.2 | 1.4e-05 | 0.042 | 13.4 |
| pfu_aug1.0_5748.1_52601.t1 | 11 | 9 | LRR_1 | 365 | 385 | 4.1e-07 | 29.1 | 0.00032 | 0.96 | 9.7 |
| pfu_aug1.0_5748.1_52601.t1 | 8 | 8 | LRR_8 | 390 | 420 | 1.6e-28 | 98.2 | 0.011 | 33.0 | 4.3 |
| pfu_aug1.0_5748.1_52601.t1 | 11 | 10 | LRR_1 | 392 | 408 | 4.1e-07 | 29.1 | 0.086 | 250.0 | 2.3 |
| pfu_aug1.0_5748.1_52601.t1 | 9 | 9 | LRR_4 | 414 | 422 | 1.9e-16 | 59.2 | 0.042 | 120.0 | 2.4 |
| pfu_aug1.0_5748.1_52601.t1 | 11 | 11 | LRR_1 | 414 | 425 | 4.1e-07 | 29.1 | 0.0065 | 19.0 | 5.7 |
| pfu_aug1.0_5748.1_52601.t1 | 5 | 5 | LRR_5 | 483 | 499 | 2.8e-07 | 30.2 | 0.56 | 1700.0 | -1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5748.1_52601.t1 | gi|301760245|ref|XP_002915928.1| | PREDICTED: CD180 antigen [Ailuropoda melanoleuca] | 6.0e-13 |
Transcript
| Transcript ID | pfu_aug1.0_5748.1_52601.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5748.1_52601.t1 atggataacaagctattgcttttcttaatttgtgtatcatctaatgtggtgacggaaatcagaggagttaaagaacatac taaagcttgtcactgtgaacctaaagacaccgagaaaacaacttggttggaatgttccgatgttgaccaatatttccgta tcaccaaagagaatactgcaaattgttcacattacaagccgaaccatctagtgattactaatagcgatattccaactcta acagcagaattctttggaataatagcttgcgatcattttgaagtagtcagtttttcttcatgtggcatacgtaatataac agctaatgcattttcaaatttcacacgcttgaaaagcttgattctaagagataatgagttaacagaaaatacactgacag aaggtcttaaaagcataacgaatctgaaaatcaaaactttaaaccttgacgggaataatttcaccatcataaaaaatgaa acttttctttccttaggatcacatataacttctctacagctgtctgattgtggaatagaatatatcgaaaccgatttctt acgatggttaccgaatctaaagaagataagcctcaataataatgcattacacgggataaactttctcgcggtacaaaagg acctatgtcgtttacatgatgtacagataatgtacaattctatcagtaaccttgatttgtttcaacgtgaatcaacaaaa ccatgcattcagtctattgaaagattatcattgactggaaatccagtagaatccctcgtccctgtgaatagtttgagaaa ccttagttttttatatgctcaacgcataccgtgcaatgtcaaaagccaatttcctgtattcaatactcctcttgaagcct tatacttggacgagggcaatttcagttgctggagaaaagacatgttttcaagtttgaaacaattagaaatcttaagtcta aaagggacgaattttgcgcatgcacctttagattttatcatacaactgttctccgaacttgatgttgaaacattgatatt gaagaatgcaggtttacggattataccagatcatatgttcagaaatatgacgtcattgaaaaatcttgatttaagtgaca actcaatatcctcatggagtacaaatacttttagtggaccccaactattggtcagtgtattactgaataacaacaacata agcgttattgcaaaaaactcacttccatcggtgaaccattcactggatctttctaacaatccttttctatgctcttgcgt tcttgttgacttccgtctatactttgaacatcacaaagatattctcatgagagagcccgttggcacttataaatgtgcta agccactgcgatggaaagagatagatttgaagtccttccgtccagaatacacagactgcaatccttttaacccctatgtc attgtagcattctgtacgtgtgcttctctcatttttattaccattgtggtgaatgtcatttctgcttgtcgagagaggaa tgccacaacaattcatatgattagaacgttaagaagaaatgtgtatcacagcttggacgaaaatactagtcacgagtatt aa |
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Protein
| Protein ID | pfu_aug1.0_5748.1_52601.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5748.1_52601.t1 MDNKLLLFLICVSSNVVTEIRGVKEHTKACHCEPKDTEKTTWLECSDVDQYFRITKENTANCSHYKPNHLVITNSDIPTL TAEFFGIIACDHFEVVSFSSCGIRNITANAFSNFTRLKSLILRDNELTENTLTEGLKSITNLKIKTLNLDGNNFTIIKNE TFLSLGSHITSLQLSDCGIEYIETDFLRWLPNLKKISLNNNALHGINFLAVQKDLCRLHDVQIMYNSISNLDLFQRESTK PCIQSIERLSLTGNPVESLVPVNSLRNLSFLYAQRIPCNVKSQFPVFNTPLEALYLDEGNFSCWRKDMFSSLKQLEILSL KGTNFAHAPLDFIIQLFSELDVETLILKNAGLRIIPDHMFRNMTSLKNLDLSDNSISSWSTNTFSGPQLLVSVLLNNNNI SVIAKNSLPSVNHSLDLSNNPFLCSCVLVDFRLYFEHHKDILMREPVGTYKCAKPLRWKEIDLKSFRPEYTDCNPFNPYV IVAFCTCASLIFITIVVNVISACRERNATTIHMIRTLRRNVYHSLDENTSHEY |
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