Gene
| Gene Model ID | pfu_aug1.0_5754.1_31031 |
|---|---|
| Locus | scaffold5754.1 : 11880 ... 22955 : - |
| To GenomeBrowser | scaffold5754.1:11880..22955 |
| Genes list of scaffold | scaffold5754.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | cytosolic malate dehydrogenase |
| Description | NCBI BLASTP hit to EU863455.1 |
| mRNA evidence |
| Study field | other |
|---|---|
| Gene name | cytosolic malate dehydrogenase |
| Description | GenBank: AAZ79367.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5754.1_31031.t1 | 2 | 1 | Ldh_1_C | 21 | 89 | 1.9e-20 | 73.3 | 1.0e-12 | 5.0e-09 | 36.1 |
| pfu_aug1.0_5754.1_31031.t1 | 2 | 2 | Ldh_1_C | 85 | 154 | 1.9e-20 | 73.3 | 1.7e-13 | 8.4e-10 | 38.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5754.1_31031.t1 | gi|296218448|ref|XP_002755457.1| | 3.00018e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_5754.1_31031.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5754.1_31031.t1 atggagagaaaagacttgttggctgctaatgtcaagatcttcaaagttcagggccaagctctcgacaaagttgccaagaa gacagtcaaggttgcggagaaagttggagtaccagcagatgctgtaaaaaactgtatcatctggggtaaccattcctcta cacagtttcccgatgttcaacatgccactgtagagaaaaacaatcagaaaatgtccgtcatagaagctgttaaagacgac aactgggtgaaaaatgattttgtaaagggtacgtgggtatccatggcagtaatgtctgatggatcatatgaaacaccaga gggtctgatctacagcttccctgtgacaatagattcaagtcataagtacactatcgtccaaggactgactatcaatgact tcgctaaggagaaaatggatataactgccaaagaactgcaagaggagaaagccatggctatggaggcctgtcaagactga |
|
Protein
| Protein ID | pfu_aug1.0_5754.1_31031.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5754.1_31031.t1 MERKDLLAANVKIFKVQGQALDKVAKKTVKVAEKVGVPADAVKNCIIWGNHSSTQFPDVQHATVEKNNQKMSVIEAVKDD NWVKNDFVKGTWVSMAVMSDGSYETPEGLIYSFPVTIDSSHKYTIVQGLTINDFAKEKMDITAKELQEEKAMAMEACQD |
|