Gene
| Gene Model ID | pfu_aug1.0_576.1_29351 |
|---|---|
| Locus | scaffold576.1 : 86637 ... 88654 : - |
| To GenomeBrowser | scaffold576.1:86637..88654 |
| Genes list of scaffold | scaffold576.1 |
| Synonym | pfu_aug2.0_569.1_30926 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to FR715625 (MgC1q46). 86 bits, 2e-15 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_576.1_29351.t1 | 1 | 1 | C1q | 10 | 135 | 1.5e-24 | 86.3 | 1.2e-28 | 1.7e-24 | 86.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_576.1_29351.t1 | gi|325504391|emb|CBX41695.1| | putative C1q domain containing protein MgC1q46 [Mytilus galloprovincialis] | 2.0e-15 |
Transcript
| Transcript ID | pfu_aug1.0_576.1_29351.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_576.1_29351.t1 atgtacttgtcaacagcacatacggtttttatgcctatgcaacgcggcaacaatatcttcacagtcaacaagttatcaaa tttgattacgtggagacaaatgttggaaattgctttgacgtcacaacaggaaaatttcgggcacctgtcagagggctata tttcttcggcggaaacataatggcagcacccgggcattacatccatattgaaatggttaaaaatggccgccgagtagcga gcatttttgccgccaagggagaatatccttatgacgacaacaccggaagtgctgcgattaacctagttttgcagaaagga gaggaagtttggttacgggatcagaatgatccggacggcgaagcagttgtgactgatccttacgccatgttctccgggtt cttgataaatgaaattgtttga |
|
Protein
| Protein ID | pfu_aug1.0_576.1_29351.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_576.1_29351.t1 VLVNSTYGFYAYATRQQYLHSQQVIKFDYVETNVGNCFDVTTGKFRAPVRGLYFFGGNIMAAPGHYIHIEMVKNGRRVAS IFAAKGEYPYDDNTGSAAINLVLQKGEEVWLRDQNDPDGEAVVTDPYAMFSGFLINEIV |
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