Gene
| Gene Model ID | pfu_aug1.0_57948.1_48883 |
|---|---|
| Locus | scaffold57948.1 : 166 ... 3955 : - |
| To GenomeBrowser | scaffold57948.1:166..3955 |
| Genes list of scaffold | scaffold57948.1 |
| Synonym | pfu_aug2.0_4129.1_32624 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_57948.1_48883.t1 | 1 | 1 | UBA | 40 | 75 | 2.6e-14 | 52.5 | 1.3e-17 | 3.8e-14 | 52.0 |
| pfu_aug1.0_57948.1_48883.t1 | 2 | 1 | XPC-binding | 139 | 179 | 3.1e-16 | 58.5 | 1.7e-19 | 5.2e-16 | 57.8 |
| pfu_aug1.0_57948.1_48883.t1 | 2 | 2 | XPC-binding | 188 | 196 | 3.1e-16 | 58.5 | 0.042 | 120.0 | 2.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_57948.1_48883.t1 | gi|224091533|ref|XP_002188381.1| | PREDICTED: UV excision repair protein RAD23 homolog B [Taeniopygia guttata] | 3.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_57948.1_48883.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_57948.1_48883.t1 atggaaacgactccagctgccactgcgacagcaccacaaacagcatcagcagggtcaggtgtgtcaccatctgaccctac actccaggctagcggtttactggtgacaggggaggactatgagaagatggtacaagaaatcacatccatgggctttgaga gggaacaggttgtgcgggccttacgtgctagctttaataaccctgacagggcagtggagtaccttttcagtggtattcct gatgttcctgcagagccagaggcaccgactgctacccagaccgccccacccaccactcctactggagggggtgggaccac aacatcaaccacacccccaacagccacacccccagcatctactgaatcaataccggtatcgagcatacctacacccagac caggtgaagatcctttagcatttttgaggacacaacctcagtttcagaggatgagacagctcatacaagaaaatccacag tttctccctgctcttctacaacaaataggtcaatcaaatccacccctcttacaggtaagatcaaatccatcccattttca ggtaagatcaaatccttccctcttacaggtaagatcaaatctacctcttttacaggttaaatcaaatccacccccttaca agtag |
|
Protein
| Protein ID | pfu_aug1.0_57948.1_48883.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_57948.1_48883.t1 METTPAATATAPQTASAGSGVSPSDPTLQASGLLVTGEDYEKMVQEITSMGFEREQVVRALRASFNNPDRAVEYLFSGIP DVPAEPEAPTATQTAPPTTPTGGGGTTTSTTPPTATPPASTESIPVSSIPTPRPGEDPLAFLRTQPQFQRMRQLIQENPQ FLPALLQQIGQSNPPLLQVRSNPSHFQVRSNPSLLQVRSNLPLLQVKSNPPPYK |
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