Gene
| Gene Model ID | pfu_aug1.0_5798.1_38213 |
|---|---|
| Locus | scaffold5798.1 : 12846 ... 23473 : + |
| To GenomeBrowser | scaffold5798.1:12846..23473 |
| Genes list of scaffold | scaffold5798.1 |
| Synonym | pfu_aug2.0_540.1_00864 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5798.1_38213.t1 | 1 | 1 | Ribosomal_L3 | 36 | 151 | 1.4e-21 | 77.0 | 1.3e-25 | 2.0e-21 | 76.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5798.1_38213.t1 | gi|326505122|dbj|BAK02948.1| | predicted protein [Hordeum vulgare subsp. vulgare] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5798.1_38213.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5798.1_38213.t1 atgagctgtgatccctcagggtttactaaagcctacaacaatattttcctgaatgcaggagttccaacaaaaagaaaatt gacacgatttctggtgacaccaaatgctgcagtacaaccaggaacaagactaaatgttatgcacttcaaagttggagact atattgacctccaggctaaaactgtggaccatggattccagggtgtagttaagagatggggttttaaaggacaacgtcaa agtcacggtgtaggaaagagtgagcgtagacctggagccactggagtagggaggagaggcagtggtatcataaaaggaaa gaaacttccaggtcatatgggcagtgactggaacacaagtaaagggtcacaaatagtgcgtatcaacacgaagtataatt tgatctacgtacgtggtccatgctcaggtcccacacattgttacgtacgtataatggacacatgtttaccagtcaggaga gacgagatagagaagtcagagaatcatccatccatgccgactaccttcccagaagacctcacagaggaagttcctgagga atatttccacgagtccctacatcagtttaacgagccatccatcacatattctgtggatgaggactctaaataa |
|
Protein
| Protein ID | pfu_aug1.0_5798.1_38213.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5798.1_38213.t1 MSCDPSGFTKAYNNIFLNAGVPTKRKLTRFLVTPNAAVQPGTRLNVMHFKVGDYIDLQAKTVDHGFQGVVKRWGFKGQRQ SHGVGKSERRPGATGVGRRGSGIIKGKKLPGHMGSDWNTSKGSQIVRINTKYNLIYVRGPCSGPTHCYVRIMDTCLPVRR DEIEKSENHPSMPTTFPEDLTEEVPEEYFHESLHQFNEPSITYSVDEDSK |
|