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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_58.1_07333
Locus scaffold58.1 : 13691 ... 19085 : -
To GenomeBrowser scaffold58.1:13691..19085
Genes list of scaffold scaffold58.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_58.1_07333.t1 2 1 Glyco_transf_10 53 72 0.0 260.3 0.26 3900.0 -4.0
pfu_aug1.0_58.1_07333.t1 2 2 Glyco_transf_10 167 445 0.0 260.3 0.0 0.0 260.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_58.1_07333.t1 gi|347969435|ref|XP_312888.5| AGAP003191-PA [Anopheles gambiae str. PEST] 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_58.1_07333.t1
Definition-
>pfu_aug1.0_58.1_07333.t1
atggtcaacgacgtggtcagacgtaagagaattctcatcattatcctgtgtattgttggtacattgtattttctgttatt
ttccggagaccatggcaacataaaattaacaattggagcagcaaggagtcgtgcagaaaatacgtcggaacgctatagcg
attatgatacaagtggaaacagagataagaaaatgagggagcttaagaaaagaatggataaagctatagatttaccttac
aatgagcatagacgttcttataaaagagaaagtaaactccttatggagtccagtctacatatttatccacagtccgtcga
tagtcgatatgggaagttactaccggatcctgctgatccagtaaacgatcgcatttacgaacaactgcatcacgtaccga
ttgggtattccaataaaagtaatattaagcttaaaacaatctacttgcatggcgggaaaaatcagtggtttattgaagaa
ggtagggactttttcttcacgacggggtgtaaagttaaccactgttcatttacctataacagacaggagggacgaacagc
agatgttgtcgttttcggaaacccctatcagcttccgtttcgtcctccttggccaaggaaatcgcagaagcagatttgga
tgatgtctgctttagaaactccgccacatacgacatcgatgcgaaagtatatcggtcactttaactggaccatgtcgtat
cgtacggactctatcattgtatccccctactttaaatatgaagcgttccctgagaagaaagatctgccttacaaaaatca
cgcagcagggaagaagaagaaggttgcttggttcgtgacaaactgctttaacgtagagagtggcaggatggagtacgcta
aggaactacaaaaatacatagatatagacatcttcggtggttgtggtacaaagaagtgcaagaagagtgaatgggaaaag
tgtagacaaatggtgcaaagagattataaattctacctggcctttgagaactcgaaatgtaaagactatctaacagagaa
ggtccagactggattattatacgatgctatcccgatagtgcttggtgccgccacttgggagtatgccaatgccttacccg
cacattcgtatattgacgtagaagatttcaagtcgccgaaacacctggccgagtaccttcaaaaacttgatgagaacgac
gacctatttaatgagtatttccgttggaagagttacgggacctttgtcgagaccaaaccctggtgccgcgtatgttccat
ggtacacgacgaatcgttcccgaccatttggtacgataatgtagactcatggtggcacgccaagtcagcctgtatcaaga
aagacacgcattggtggtacaacgtggtagattaa

Protein
Protein IDpfu_aug1.0_58.1_07333.t1
Definition-
>pfu_aug1.0_58.1_07333.t1
MVNDVVRRKRILIIILCIVGTLYFLLFSGDHGNIKLTIGAARSRAENTSERYSDYDTSGNRDKKMRELKKRMDKAIDLPY
NEHRRSYKRESKLLMESSLHIYPQSVDSRYGKLLPDPADPVNDRIYEQLHHVPIGYSNKSNIKLKTIYLHGGKNQWFIEE
GRDFFFTTGCKVNHCSFTYNRQEGRTADVVVFGNPYQLPFRPPWPRKSQKQIWMMSALETPPHTTSMRKYIGHFNWTMSY
RTDSIIVSPYFKYEAFPEKKDLPYKNHAAGKKKKVAWFVTNCFNVESGRMEYAKELQKYIDIDIFGGCGTKKCKKSEWEK
CRQMVQRDYKFYLAFENSKCKDYLTEKVQTGLLYDAIPIVLGAATWEYANALPAHSYIDVEDFKSPKHLAEYLQKLDEND
DLFNEYFRWKSYGTFVETKPWCRVCSMVHDESFPTIWYDNVDSWWHAKSACIKKDTHWWYNVVD

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