Gene
| Gene Model ID | pfu_aug1.0_58.1_07340 |
|---|---|
| Locus | scaffold58.1 : 98507 ... 105785 : - |
| To GenomeBrowser | scaffold58.1:98507..105785 |
| Genes list of scaffold | scaffold58.1 |
| Synonym | pfu_aug2.0_113.1_10288 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_58.1_07340.t1 | 1 | 1 | A2M_comp | 2 | 98 | 8.2e-26 | 90.7 | 3.4e-29 | 1.3e-25 | 90.1 |
| pfu_aug1.0_58.1_07340.t1 | 1 | 1 | A2M_recep | 207 | 303 | 2.9e-26 | 91.4 | 2.8e-29 | 1.0e-25 | 89.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_58.1_07340.t1 | gi|40074252|gb|AAR39412.1| | alpha macroglobulin [Azumapecten farreri] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
| Dshape | 2 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_58.1_07340.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_58.1_07340.t1 atgacaatgcttatggacagagccaaatttgaaggtgaaactatttactgggagagacagaaggatgaagatgagaatgt aaccgtttctccctaccgatggttccgtgccccatctgctgagattgagatcacatcgtatgccttactggccaatgtag tcaataaccaatcaaacgctgccgtaaatgccaaacccatcgttatgtggctcagtcggcaacgtaactctcttggagga tttggatctactcaggacacaatagtggctttgcaggcattgtccagatatgctagcttggtataccagaaaggtgttaa cattatggtacagatgtcagggacagggtttacctccatgtttgagataaatgacaagaacaacctacttctacagagta aggagttcagtaagcctataccggactctctgatgtgctctgtggcaggcaagggatgtgcttttattcaggctagtgtg aaatacaatattcctgatgagccaactggacctgcatttgatctaactactaaaatttacagatccaaggatcatgcaaa ccactgtgcgaaaagaactctcaacatatgtgttaaatttacaggacaaggtggagtcagtaacatggctatagtagatg tcaagatgcagacgggatggatacctgtcaaagattcactcaaaaagttactacaaaagagtcagaatggcggaccttca cagagcatagatttacagaagtatgaaacagacggtaacatggtacatctgtactttgatcagcttgacactttgagacg ttgcttttacttcgatgtggaacaaaacatagaggttacagatcctaaaccagcctttgttaaagtctatgattactatg aaacagacttgtccgtgacaaaacagtatgacatcaggacaacatgtggtacaaaggaggagttaccataccttaccccg gaggagtacgcttatggtttactgaacacccccgtggatgagattgtacaagtcaggctaccgtctggtaggctaccatc tcctcgtggatctagtagtgtatttagtcgtccaatgcgttgtcctaagtgcctgagttacctcccctcacctgatgata agatggaggaactgatctgcagtgccagtcacatttataagatgcgtacaggaactggtgataatatgaagttgtacgct gacatgaaacctcaaaggaaggtcagaatagcaaagtttgttacgagagaaatgaatgacgtctgtaaaggctgtgatat gatgaaaacaacgaagaaggacggatttcagaaggtgctagttttcacagagaccggtgtatacaacagcacttccagta agataatcttagatgataggtctaccatagttaaattgaccaaggctatagagacaatagtgttcaggagaaacaaggga tgctga |
|
Protein
| Protein ID | pfu_aug1.0_58.1_07340.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_58.1_07340.t1 MTMLMDRAKFEGETIYWERQKDEDENVTVSPYRWFRAPSAEIEITSYALLANVVNNQSNAAVNAKPIVMWLSRQRNSLGG FGSTQDTIVALQALSRYASLVYQKGVNIMVQMSGTGFTSMFEINDKNNLLLQSKEFSKPIPDSLMCSVAGKGCAFIQASV KYNIPDEPTGPAFDLTTKIYRSKDHANHCAKRTLNICVKFTGQGGVSNMAIVDVKMQTGWIPVKDSLKKLLQKSQNGGPS QSIDLQKYETDGNMVHLYFDQLDTLRRCFYFDVEQNIEVTDPKPAFVKVYDYYETDLSVTKQYDIRTTCGTKEELPYLTP EEYAYGLLNTPVDEIVQVRLPSGRLPSPRGSSSVFSRPMRCPKCLSYLPSPDDKMEELICSASHIYKMRTGTGDNMKLYA DMKPQRKVRIAKFVTREMNDVCKGCDMMKTTKKDGFQKVLVFTETGVYNSTSSKIILDDRSTIVKLTKAIETIVFRRNKG C |
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