Gene
| Gene Model ID | pfu_aug1.0_5821.1_16779 |
|---|---|
| Locus | scaffold5821.1 : 26342 ... 35705 : - |
| To GenomeBrowser | scaffold5821.1:26342..35705 |
| Genes list of scaffold | scaffold5821.1 |
| Synonym | pfu_aug2.0_59.1_30101 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5821.1_16779.t1 | 3 | 1 | Lectin_C | 20 | 66 | 2.2e-20 | 73.2 | 5.9e-07 | 0.0029 | 18.2 |
| pfu_aug1.0_5821.1_16779.t1 | 3 | 2 | Lectin_C | 257 | 296 | 2.2e-20 | 73.2 | 2.8e-05 | 0.14 | 12.8 |
| pfu_aug1.0_5821.1_16779.t1 | 3 | 3 | Lectin_C | 317 | 419 | 2.2e-20 | 73.2 | 1.2e-14 | 5.8e-11 | 42.9 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5821.1_16779.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5821.1_16779.t1 atgctcattttggtgctctatttatgccttttgtcgaaattcgatctggtggaagaaatgaaaagttggtacagtgcaaa cgcctcatgcaccagcaataatgaaacactggctgtcattcatgatctaaagtcacctgaattccacaaagctgtgagag acattgtggagaataatggtcgggtttgggtttctgtctctagcgtcattgatgatttgtttgttgaaatgtcctactta gcttctgacttcaacttcacttacagatacatagacgatgtgttgtccatcaataatccaagtttcgcggatgacctgag cagtatctatccttcagagcttgaagtcaaagaaactacagagacaaataattcagcatcctatttggacataattttgt cctacgacactgatggtcacatgaacacctcattctttgacaaacgtgacgactttaatttcagcattacaaactttcct tttctgagtagcaacattccttcatcgcctgcttatggcgtgttcatatctaagttgatacgctatgccagagcaagtac gaaatatacggattttgttctgagagctaggcgtctttcagataaacttctcagtcagggatatgtttgtgaccgactaa catcgtcactgaggaagttctacggtcgatatagggaactcgtcatacactataatgtcccactctccagaatgggatat ggtcattatccatatttgtcatgtacatatggttccagggcaatacgatgggccataggacacccgatgcagaatgatgg ttgtgcttacatgaggaaaacagacgacagtgacgtcatcttctggtattccgcacaatgtgaaacatctatgaggtttt tatgtcagtttgaaaataattctgtttgtggtgacagattccgttgtattcgtccattacgactcactgaatcatgggaa ggtgcaagatccgcatgtgcaaggtggaacggaagtcttgcaacaataacgatccctatcgcaaattcagacagtgacat cacgtcccttactcctgggaggtattgggtaggactaaaacgacaatatgaatggagatggggagatgggtcctttgtat acaaatccggattcagacacgatttttccaaaaagagacagattggtgacctatgtacaagtgctactagcaatggaaga cattactggttagaaaagacaccatgcaagacgatgctgccctacctatgtcaaagaggaccaacgcatctccaagcagt acaaagtgtgaaaatgcagccgacagaggtagatttagaagtcattcagaatgtaacaattgaaggaactactgagaaat caccggacgaagattcaaataaagttctcctacaaacaattttattccttggcattggagtagcgtctgggatagcattt gtgatatgtatttgtttcatcattttcttcataaggagatgtcacaagagtaggatggcaagtaagtcttcatcataccg acatgcaccgagggataacttcggagtgtttccgtccgaggagacacaacaacaatcggaagacatcgggaacgaatcac cattcagaaggacacaaaggctgttaagagaagcgtctttgggaagtggatcagaaggatatcgcagcaactcttggaaa cgagttcaaaatggcggaacccgcgaaggacgcaagattgaaaaaccagtgatgggctgtgaaatacgaaacatttatcc tagcactgaaaggaattttaaggatacaagcaaagctatttatcaagtgagggctcagttccatgccggttcgcctgacg atcgggaaggtggtgattatgcgtactccggaagcttggacactagactccgtaaaccagttaatcaggagaacaatgat gttaaattagcggagacgtacagcttacctccgaccattcgtaaggctagtgacatcgaaggacccatagatttagacac aggtgacttgtacgcatgcgtacaaaaggcaatggcgcgactaagtgaagacaacctagataaaattgaatcgcgtcctg attatacgacatgctaa |
|
Protein
| Protein ID | pfu_aug1.0_5821.1_16779.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5821.1_16779.t1 MLILVLYLCLLSKFDLVEEMKSWYSANASCTSNNETLAVIHDLKSPEFHKAVRDIVENNGRVWVSVSSVIDDLFVEMSYL ASDFNFTYRYIDDVLSINNPSFADDLSSIYPSELEVKETTETNNSASYLDIILSYDTDGHMNTSFFDKRDDFNFSITNFP FLSSNIPSSPAYGVFISKLIRYARASTKYTDFVLRARRLSDKLLSQGYVCDRLTSSLRKFYGRYRELVIHYNVPLSRMGY GHYPYLSCTYGSRAIRWAIGHPMQNDGCAYMRKTDDSDVIFWYSAQCETSMRFLCQFENNSVCGDRFRCIRPLRLTESWE GARSACARWNGSLATITIPIANSDSDITSLTPGRYWVGLKRQYEWRWGDGSFVYKSGFRHDFSKKRQIGDLCTSATSNGR HYWLEKTPCKTMLPYLCQRGPTHLQAVQSVKMQPTEVDLEVIQNVTIEGTTEKSPDEDSNKVLLQTILFLGIGVASGIAF VICICFIIFFIRRCHKSRMASKSSSYRHAPRDNFGVFPSEETQQQSEDIGNESPFRRTQRLLREASLGSGSEGYRSNSWK RVQNGGTREGRKIEKPVMGCEIRNIYPSTERNFKDTSKAIYQVRAQFHAGSPDDREGGDYAYSGSLDTRLRKPVNQENND VKLAETYSLPPTIRKASDIEGPIDLDTGDLYACVQKAMARLSEDNLDKIESRPDYTTC |
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