Gene
| Gene Model ID | pfu_aug1.0_5830.1_09224 |
|---|---|
| Locus | scaffold5830.1 : 2706 ... 11315 : - |
| To GenomeBrowser | scaffold5830.1:2706..11315 |
| Genes list of scaffold | scaffold5830.1 |
| Synonym | pfu_aug2.0_38.1_26712 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5830.1_09224.t1 | 1 | 1 | tRNA-synt_2 | 2 | 181 | 1.2e-30 | 106.4 | 1.0e-34 | 1.5e-30 | 106.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5830.1_09224.t1 | gi|348576874|ref|XP_003474210.1| | PREDICTED: asparagine--tRNA ligase, cytoplasmic-like isoformX1 [Cavia porcellus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5830.1_09224.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5830.1_09224.t1 atgtccaggacaaggagacatctagcagagtatacgcatatagaagcagaatgtccgtttattacatttgatgaaatgtt agaccgattagaggatcttgtatgtgatgtagtagatagagtactcaaatcaccgtatggaaagattgttagcgaactta accctaacttcaaacctccgaaaaagccattcaaaagaatgaactacagtgatgcagtgaaatacctcaaggaacatgac atcaaaaaagatgatggtacttactatgaatttggagaggatataccagaggcccctgagaggaagatgacagatcagat taacgagccgatattactgtgtcgatttccggcagaaatcaagtccttctacatgcaaaggtgtgcagatgatcccagac tcacagaatctgtagatgtactaatgccaaatgtaggagagatagtaggtggatctatgaggatatataaacatcaggag ctgatggagggattccaaagagaagggatagatactaccaattactactggtatactgaccaggcaagtcaccataagta g |
|
Protein
| Protein ID | pfu_aug1.0_5830.1_09224.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5830.1_09224.t1 MSRTRRHLAEYTHIEAECPFITFDEMLDRLEDLVCDVVDRVLKSPYGKIVSELNPNFKPPKKPFKRMNYSDAVKYLKEHD IKKDDGTYYEFGEDIPEAPERKMTDQINEPILLCRFPAEIKSFYMQRCADDPRLTESVDVLMPNVGEIVGGSMRIYKHQE LMEGFQREGIDTTNYYWYTDQASHHK |
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