Gene
| Gene Model ID | pfu_aug1.0_5834.1_31056 |
|---|---|
| Locus | scaffold5834.1 : 2886 ... 8794 : + |
| To GenomeBrowser | scaffold5834.1:2886..8794 |
| Genes list of scaffold | scaffold5834.1 |
| Synonym | pfu_aug2.0_551.1_04324 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5834.1_31056.t1 | 5 | 1 | zf-met | 110 | 120 | 1.9e-06 | 27.8 | 0.16 | 260.0 | 2.0 |
| pfu_aug1.0_5834.1_31056.t1 | 4 | 1 | zf-H2C2_2 | 351 | 373 | 2.9e-10 | 39.9 | 1.3e-05 | 0.022 | 15.0 |
| pfu_aug1.0_5834.1_31056.t1 | 4 | 1 | zf-C2H2 | 363 | 384 | 5.1e-09 | 35.9 | 9.3e-05 | 0.15 | 12.4 |
| pfu_aug1.0_5834.1_31056.t1 | 5 | 2 | zf-met | 363 | 380 | 1.9e-06 | 27.8 | 0.00057 | 0.94 | 9.7 |
| pfu_aug1.0_5834.1_31056.t1 | 4 | 2 | zf-H2C2_2 | 377 | 397 | 2.9e-10 | 39.9 | 0.0026 | 4.4 | 7.7 |
| pfu_aug1.0_5834.1_31056.t1 | 4 | 2 | zf-C2H2 | 389 | 411 | 5.1e-09 | 35.9 | 0.0017 | 2.8 | 8.4 |
| pfu_aug1.0_5834.1_31056.t1 | 5 | 3 | zf-met | 390 | 409 | 1.9e-06 | 27.8 | 0.13 | 220.0 | 2.2 |
| pfu_aug1.0_5834.1_31056.t1 | 4 | 3 | zf-H2C2_2 | 403 | 429 | 2.9e-10 | 39.9 | 3.7e-05 | 0.061 | 13.6 |
| pfu_aug1.0_5834.1_31056.t1 | 4 | 3 | zf-C2H2 | 420 | 442 | 5.1e-09 | 35.9 | 3.8e-07 | 0.00063 | 19.9 |
| pfu_aug1.0_5834.1_31056.t1 | 5 | 4 | zf-met | 420 | 440 | 1.9e-06 | 27.8 | 5.2e-05 | 0.086 | 13.0 |
| pfu_aug1.0_5834.1_31056.t1 | 4 | 4 | zf-H2C2_2 | 434 | 458 | 2.9e-10 | 39.9 | 2.5e-08 | 4.0e-05 | 23.6 |
| pfu_aug1.0_5834.1_31056.t1 | 4 | 4 | zf-C2H2 | 448 | 471 | 5.1e-09 | 35.9 | 2.0e-05 | 0.033 | 14.5 |
| pfu_aug1.0_5834.1_31056.t1 | 5 | 5 | zf-met | 448 | 469 | 1.9e-06 | 27.8 | 6.6e-07 | 0.0011 | 19.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5834.1_31056.t1 | gi|296233373|ref|XP_002761985.1| | 1.0e-16 |
Transcript
| Transcript ID | pfu_aug1.0_5834.1_31056.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5834.1_31056.t1 atgcgtgactcagtaatggatgttatgaacttaccgattattttaccttctcaaaatatgacaagcctgggtttccaaca caatcttcacctgcgtagtgacaatcatgtaattggtggttcaacaggaacagacaaaaacatagatgagaactattttg atagtttaggaatttctcgccggtctgaaacctgggatgtgacatgtggtttcaatttacctcctcagaatatgacattt gcggacaggggtgttttacaatctaggacattagggaatagcaacaagctacaagaaataggaaataatgtagtaaataa tacaacagacgaaaatgcaaagcagcacacacgtgggaagtcgaatttaatcggatctagtagagaaattcaaatggaca atgtacaggtgaaagatgacaaaagtgtaaaagttaccatagacttaacacatacaaacccacgcgttacaattcaacgc ctggcaaaagagattgaacatactgtcactgataccctgaacacctcaagcaaaaataaagatcacaggtcctatacaaa aggcaaaaacaacaattcaaatatacagctgacacctcaaaatatgacatataattgtacgagtttgccacagacaaaca ggatcagtgtaagtcagaacacatcaagaagtgacaaatccgaatgttcagctgaaaatatgactagttacagctacgac ttccaatttctaaacatgacacacacaaacaaacaacgcttaacacgagacggtatagacattacaactcaaagaacgaa caaaaacaacgtcgaaacagctagcgccattattcagaatacaagtcacgacatggcttcaatcagtcaacatcattcaa cagatagtacggataaaaagagtcccttttcttgtttaaaacggatattgcaaagcaactctatgaatgaaacgtcttca gcggggactgaaaacaaacggacgagatattcactaaggaggaaaccaaatcaaaagagttatgcagaaagtagtgacag tgaaatgtattacaatcggcatttattaattcatactggaccagtaacgtgtaaggagtgtaataggctgttcaaacaca aggcagcctacctgagacatgccattgcccacaatggtaaacagtacatatgcgataaatgtggaaaggttcacgagagt tatattaattataggaaccatctgaataaccatctcctaagcgagtctgtccgcaagtttaaatgtgaaacgtgtggcaa attcttcatgacgcaaaaccatttaaatacacatgcccggattcatttgccggacagaccattcaaatgtgctcattgtg acgctactttcaaattcaagaatcacttgaaaaatcatctccgcagctactgcccaaagatgaaaaactaa |
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Protein
| Protein ID | pfu_aug1.0_5834.1_31056.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5834.1_31056.t1 MRDSVMDVMNLPIILPSQNMTSLGFQHNLHLRSDNHVIGGSTGTDKNIDENYFDSLGISRRSETWDVTCGFNLPPQNMTF ADRGVLQSRTLGNSNKLQEIGNNVVNNTTDENAKQHTRGKSNLIGSSREIQMDNVQVKDDKSVKVTIDLTHTNPRVTIQR LAKEIEHTVTDTLNTSSKNKDHRSYTKGKNNNSNIQLTPQNMTYNCTSLPQTNRISVSQNTSRSDKSECSAENMTSYSYD FQFLNMTHTNKQRLTRDGIDITTQRTNKNNVETASAIIQNTSHDMASISQHHSTDSTDKKSPFSCLKRILQSNSMNETSS AGTENKRTRYSLRRKPNQKSYAESSDSEMYYNRHLLIHTGPVTCKECNRLFKHKAAYLRHAIAHNGKQYICDKCGKVHES YINYRNHLNNHLLSESVRKFKCETCGKFFMTQNHLNTHARIHLPDRPFKCAHCDATFKFKNHLKNHLRSYCPKMKN |
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