Gene
| Gene Model ID | pfu_aug1.0_5843.1_67338 |
|---|---|
| Locus | scaffold5843.1 : 6846 ... 33841 : + |
| To GenomeBrowser | scaffold5843.1:6846..33841 |
| Genes list of scaffold | scaffold5843.1 |
| Synonym | pfu_aug2.0_56.1_20136 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5843.1_67338.t1 | 2 | 1 | I-set | 17 | 103 | 2.5e-15 | 56.0 | 3.8e-16 | 4.0e-13 | 49.0 |
| pfu_aug1.0_5843.1_67338.t1 | 1 | 1 | Ig_2 | 26 | 102 | 2.3e-07 | 30.8 | 2.1e-09 | 2.3e-06 | 27.6 |
| pfu_aug1.0_5843.1_67338.t1 | 5 | 1 | fn3 | 135 | 215 | 0.0 | 245.6 | 6.9e-19 | 7.3e-16 | 58.0 |
| pfu_aug1.0_5843.1_67338.t1 | 5 | 1 | Interfer-bind | 166 | 212 | 1.7e-15 | 56.9 | 1.2e-05 | 0.013 | 15.4 |
| pfu_aug1.0_5843.1_67338.t1 | 2 | 2 | I-set | 168 | 223 | 2.5e-15 | 56.0 | 0.19 | 210.0 | 1.8 |
| pfu_aug1.0_5843.1_67338.t1 | 5 | 2 | fn3 | 234 | 313 | 0.0 | 245.6 | 7.3e-20 | 7.7e-17 | 61.2 |
| pfu_aug1.0_5843.1_67338.t1 | 5 | 2 | Interfer-bind | 264 | 307 | 1.7e-15 | 56.9 | 0.096 | 100.0 | 3.0 |
| pfu_aug1.0_5843.1_67338.t1 | 5 | 3 | fn3 | 328 | 415 | 0.0 | 245.6 | 1.4e-20 | 1.5e-17 | 63.4 |
| pfu_aug1.0_5843.1_67338.t1 | 5 | 3 | Interfer-bind | 339 | 414 | 1.7e-15 | 56.9 | 0.00024 | 0.26 | 11.3 |
| pfu_aug1.0_5843.1_67338.t1 | 5 | 4 | fn3 | 434 | 515 | 0.0 | 245.6 | 5.4e-14 | 5.7e-11 | 42.3 |
| pfu_aug1.0_5843.1_67338.t1 | 5 | 4 | Interfer-bind | 477 | 510 | 1.7e-15 | 56.9 | 0.0077 | 8.1 | 6.5 |
| pfu_aug1.0_5843.1_67338.t1 | 5 | 5 | fn3 | 536 | 619 | 0.0 | 245.6 | 1.0e-10 | 1.1e-07 | 31.8 |
| pfu_aug1.0_5843.1_67338.t1 | 5 | 5 | Interfer-bind | 553 | 613 | 1.7e-15 | 56.9 | 8.9e-05 | 0.094 | 12.7 |
Transcript
| Transcript ID | pfu_aug1.0_5843.1_67338.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5843.1_67338.t1 atggcaaagtgtgagattcggtgtaaacaatgcgatgagtacttaaaaccaagatttgtgcggaggctggtgaatgaggt tgcccagcgtaattctgaccttttccttcgctgtgatatctatggcatccccaaacctacgatatactgggtgaaaaatg ggcaaaacatcacagaaacaggctatattcaagtggtggaagacaagcacctaagaattctgggattgttaccgcgggat gctggactttaccagtgtatgggcagtaatccttacggatctgtacaaggtgttttacgccttacggtacaggatcctga tgtgtcccttcccctcgtaccatcaagatattcctccccatatttaggggcccagtacggggacatagccaaccttccca ccaagccacggaacctaactgcagctattgtgtctaagaggtttgtgacactgaagtgggagtcaccattatcctcgggg gctacatctattacagcttactctgtgttctggagggaaagaggatcagaaagggagcgagtgttaaatacaacagagtc tcatctagaagctaacatccaacatctaaagccaaacacaaactatgagttcagagtacaagcttacaatacctacggtc ctagtcctaagtttgctagtctaacggttcttacagataaagatgttgatgtgccaagtcctgcagtaaatgttcgtgcc acacccctctccccacactccatccttgttcagtgggatccaccccagatgccaaaagggatcatcaccaagtacatact tatctactatgaggttggtgtcaatggtgaacataggaaagaggttaaaggaactaccttcacactaactagcttaaagg cgtttagagagtacagtttccgtgttatagctgtgaatgagaatggagaggggatgagtacagaggaatttgtggccata acgttttctgacaaaccctcgtcaccacccaaaaatccttccctggaaactgtcagtgccacgagcctgattgtaagatg ggagccaccacccccggattctcagaatggtgtcatcacaggatacaagataagatacaagaagaggtcaggtgaagtgc gcggcagtaagtctgtaacgacagatgggaatcgaaggctgtatgctctgacagacttagataagaactcagaataccag gtgaagatttcagctctgacggtcaatggtagtgggccagcctcggagagactgagagcaactacatataaagatgatct tgatgagtctgcagtccctcctcctccccaaaggataagagtaactccctatgcccattccatacgtgtatcatggtcca gtcctaaccctgagtccaaggtccttgttagaggctacaccctagggtggggaaaaggcgtggctgatgactatcagaaa gtcttggatgctgacactcatgtctacaccattgaacatctgcacccgtcatctgagtatgtgataacagtcagagcatt taacaaccgtggtgatggccaaccaagatatcaaaccgccacaaccagcgaagaaacattccaagagaccatcacaccta tgatgcctccagtcggtttgaaaaccatcgtcttgtcaccttccaccgtggttttaacatggtctgacacatctctggga accaatcaggttgtacaggataaccggttttacactgtacggtacagagcagtgtctgactccggcagataccgattact taactccaccgacctgaatgcacacattgacaacctacgaccaaacaccagatatgaatttgaggtcaaggtcattaaag ttgacggtaatggtggagggaaagtggacgcacctaaagaccctggcattgccaatccaggtaatcgtatctggaattac agtcccactaatccaggctccgatgataagagtgagacagataagaagtcagatggcggtgtcggaggtttgtcgacagg tatcattaacatcatcatcgcttccgttgtgggtaccacattctgtgtggttattgtggtggtagctatcatatactgta agaggagagataataacgacaggaataaaaggacgaatcagaatttgacccaatctccaaacaaaggtaaacctcaggga agtgccaaaccagatgtactatggatcaatgacatagagatgaagaacgtagataaaccagatcggagcgagtccatgtt aaccatgagtaatgccagtacgttacagagacgtagctctaacgagtaccgatcaatggatgacttacctccatatcatc ctgatatagagagaaatgtctatcattcctgtaaccttggtcataattgtgaatggttagtgtcagggctttatatctca tatttgacaagaccatcttattggtatcttatgaaattaaactggaagtttgacattctgttatcaggacaccactaa |
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Protein
| Protein ID | pfu_aug1.0_5843.1_67338.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5843.1_67338.t1 MAKCEIRCKQCDEYLKPRFVRRLVNEVAQRNSDLFLRCDIYGIPKPTIYWVKNGQNITETGYIQVVEDKHLRILGLLPRD AGLYQCMGSNPYGSVQGVLRLTVQDPDVSLPLVPSRYSSPYLGAQYGDIANLPTKPRNLTAAIVSKRFVTLKWESPLSSG ATSITAYSVFWRERGSERERVLNTTESHLEANIQHLKPNTNYEFRVQAYNTYGPSPKFASLTVLTDKDVDVPSPAVNVRA TPLSPHSILVQWDPPQMPKGIITKYILIYYEVGVNGEHRKEVKGTTFTLTSLKAFREYSFRVIAVNENGEGMSTEEFVAI TFSDKPSSPPKNPSLETVSATSLIVRWEPPPPDSQNGVITGYKIRYKKRSGEVRGSKSVTTDGNRRLYALTDLDKNSEYQ VKISALTVNGSGPASERLRATTYKDDLDESAVPPPPQRIRVTPYAHSIRVSWSSPNPESKVLVRGYTLGWGKGVADDYQK VLDADTHVYTIEHLHPSSEYVITVRAFNNRGDGQPRYQTATTSEETFQETITPMMPPVGLKTIVLSPSTVVLTWSDTSLG TNQVVQDNRFYTVRYRAVSDSGRYRLLNSTDLNAHIDNLRPNTRYEFEVKVIKVDGNGGGKVDAPKDPGIANPGNRIWNY SPTNPGSDDKSETDKKSDGGVGGLSTGIINIIIASVVGTTFCVVIVVVAIIYCKRRDNNDRNKRTNQNLTQSPNKGKPQG SAKPDVLWINDIEMKNVDKPDRSESMLTMSNASTLQRRSSNEYRSMDDLPPYHPDIERNVYHSCNLGHNCEWLVSGLYIS YLTRPSYWYLMKLNWKFDILLSGHH |
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