Gene
| Gene Model ID | pfu_aug1.0_5843.1_67340 |
|---|---|
| Locus | scaffold5843.1 : 60666 ... 67574 : + |
| To GenomeBrowser | scaffold5843.1:60666..67574 |
| Genes list of scaffold | scaffold5843.1 |
| Synonym | pfu_aug2.0_56.1_20139 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5843.1_67340.t1 | 1 | 1 | Methyltransf_32 | 18 | 154 | 3.3e-10 | 39.7 | 4.8e-14 | 7.1e-10 | 38.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5843.1_67340.t1 | gi|260820319|ref|XP_002605482.1| | hypothetical protein BRAFLDRAFT_92900 [Branchiostoma floridae] | 4.0e-30 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5843.1_67340.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5843.1_67340.t1 atggggataaagaatgtcacatttgagctgcatgattcccaggagagtatggatcagtttgcaacagtaattcaacagtg ctgtcaggaactgagacaagaatgtgacgaaaaaaagaatcaaaggagcgctgcttctggaatttcaggaaatggtctaa agtcctctgacttcctaatggaaaaacattgttcgaggacaacacaatctgatgttgagccatgtgacattccagatgat tcaagtaatacatcagatactgtgaattcttttaaccagcaatttgattccgtaagtcagtgcactctaacaggggatac agacaatactgaaacagagaaggtattgatggtggggctacactgttgtggggacctgactcctattatgatgaagtact ttaaagctctggactttatgaaaggattgtgttgtgtgagctgctgcttccatagaatgaagtttttagatgaccataat tcaaagtgtataaattttcctatgagttgtgtcgtgagaaaattatgccaagagttggagtggcatccgtcactgtatgg tttacggctggcagctcaagagacaagttgtagatggggagtacagagccaggctgatcatgagtatcacatgaagaatg tagcgtacagaggaattctacaactttatcttaataaagaaaatattgcgtacagcaaacaattccgtaagatagccaat aaaaggcacttccagtcatttgaacattacatagaagcagcatgtcagaggatagatattgatgaggatacaagtaagtc gaccttcatttcataa |
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Protein
| Protein ID | pfu_aug1.0_5843.1_67340.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5843.1_67340.t1 MGIKNVTFELHDSQESMDQFATVIQQCCQELRQECDEKKNQRSAASGISGNGLKSSDFLMEKHCSRTTQSDVEPCDIPDD SSNTSDTVNSFNQQFDSVSQCTLTGDTDNTETEKVLMVGLHCCGDLTPIMMKYFKALDFMKGLCCVSCCFHRMKFLDDHN SKCINFPMSCVVRKLCQELEWHPSLYGLRLAAQETSCRWGVQSQADHEYHMKNVAYRGILQLYLNKENIAYSKQFRKIAN KRHFQSFEHYIEAACQRIDIDEDTSKSTFIS |
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