Gene
| Gene Model ID | pfu_aug1.0_5874.1_52639 |
|---|---|
| Locus | scaffold5874.1 : 33096 ... 59065 : - |
| To GenomeBrowser | scaffold5874.1:33096..59065 |
| Genes list of scaffold | scaffold5874.1 |
| Synonym | pfu_aug2.0_197.1_23652 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5874.1_52639.t1 | 1 | 1 | Radical_SAM | 160 | 274 | 6.2e-18 | 65.5 | 1.5e-21 | 1.1e-17 | 64.6 |
| pfu_aug1.0_5874.1_52639.t1 | 1 | 1 | Wyosine_form | 276 | 339 | 5.2e-27 | 93.7 | 1.5e-30 | 1.1e-26 | 92.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5874.1_52639.t1 | gi|156394101|ref|XP_001636665.1| | predicted protein [Nematostella vectensis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5874.1_52639.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5874.1_52639.t1 atgttggaaggtttcctgacgtccgttgtatcggagtacctgccagttccggtatggacggctattttagctgccgtctg cctcgtatggatcttatttgataagaaaagcggcaataatctgaagaatgtatacaataatcctgaccctgaaacccaga agatgttttttcctgttcgatcttcacccatgtcgagttctcaggaaaagaaaatcaagatcttgtatggaacacagact gggatagaagctgactttgatgcttggaaaggaaagttatggacggcattatcaaaaataggtgacggcactatggatac ggaaaatactaaagtaacttcttcaacaaataagcacggtgaatcatcttgtgagaagggagacaagccttgcaatagag aatgtcagtgtaaggagtcggctgataatggtgtaccaggggtgaaaccagagagatttgctgagggtcttgagcccaaa cattgtgccttatcgctggtcggcgagcccattatgtatccggaaatcaacaaatttataaacttactccataacaaagg aatctctacattcttagtcaccaatgctcagttcccagatgctatcaagaatttatcgccagtcactcaactttacgtca gtgtagatgctagcacaaaagacagtttgaaaaaaatagatcgtccgttgttcagagacttctgggatagatttatcgac agttttacggcactttccgacaagaagcaaagaaccgtgtacagactgacgttagtaaaagcatggaatacggaagagct agagaattatgcagccctggtttctaagggaaatcccgattttattgaagttaagggtgtcacttactgtggggaatcta aggcttccacactaacgatgaaaaacgtaccttggcacgaagaggtggttggctttgtacagcaacttgccgacagactg gaggattatgagatagcctccgaacatgaacattcaaactgcctgcttctggctcataagaagacttttaggactgtttc catagaatttgatgacgtcatgttcagtctacgtcagataccgtctcaaatgggaaacgtccacgtcgaaaacaccctgg atacacccctcagcgacgtcttccaccgcaacgtcaaaggttccttccactactttccactctcaatatga |
|
Protein
| Protein ID | pfu_aug1.0_5874.1_52639.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5874.1_52639.t1 MLEGFLTSVVSEYLPVPVWTAILAAVCLVWILFDKKSGNNLKNVYNNPDPETQKMFFPVRSSPMSSSQEKKIKILYGTQT GIEADFDAWKGKLWTALSKIGDGTMDTENTKVTSSTNKHGESSCEKGDKPCNRECQCKESADNGVPGVKPERFAEGLEPK HCALSLVGEPIMYPEINKFINLLHNKGISTFLVTNAQFPDAIKNLSPVTQLYVSVDASTKDSLKKIDRPLFRDFWDRFID SFTALSDKKQRTVYRLTLVKAWNTEELENYAALVSKGNPDFIEVKGVTYCGESKASTLTMKNVPWHEEVVGFVQQLADRL EDYEIASEHEHSNCLLLAHKKTFRTVSIEFDDVMFSLRQIPSQMGNVHVENTLDTPLSDVFHRNVKGSFHYFPLSI |
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