Gene
| Gene Model ID | pfu_aug1.0_58928.1_05653 |
|---|---|
| Locus | scaffold58928.1 : 8797 ... 11139 : - |
| To GenomeBrowser | scaffold58928.1:8797..11139 |
| Genes list of scaffold | scaffold58928.1 |
| Synonym | pfu_aug2.0_51.1_03520 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_58928.1_05653.t1 | 2 | 1 | EF-hand_1 | 3 | 30 | 2.7e-13 | 48.1 | 8.9e-08 | 0.00019 | 20.5 |
| pfu_aug1.0_58928.1_05653.t1 | 2 | 1 | EF-hand_6 | 3 | 32 | 2.6e-09 | 36.1 | 2.7e-07 | 0.00057 | 19.5 |
| pfu_aug1.0_58928.1_05653.t1 | 2 | 1 | EF-hand_8 | 3 | 30 | 3.3e-06 | 26.6 | 0.013 | 28.0 | 4.4 |
| pfu_aug1.0_58928.1_05653.t1 | 1 | 1 | EF-hand_7 | 7 | 69 | 3.2e-08 | 33.6 | 2.6e-11 | 5.4e-08 | 32.8 |
| pfu_aug1.0_58928.1_05653.t1 | 2 | 2 | EF-hand_8 | 19 | 71 | 3.3e-06 | 26.6 | 1.0e-08 | 2.1e-05 | 24.0 |
| pfu_aug1.0_58928.1_05653.t1 | 2 | 2 | EF-hand_1 | 44 | 71 | 2.7e-13 | 48.1 | 1.9e-09 | 4.1e-06 | 25.7 |
| pfu_aug1.0_58928.1_05653.t1 | 2 | 2 | EF-hand_6 | 45 | 71 | 2.6e-09 | 36.1 | 1.3e-05 | 0.028 | 14.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_58928.1_05653.t1 | gi|241841368|ref|XP_002415333.1| | alpha-actinin, putative [Ixodes scapularis] | 2.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_58928.1_05653.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_58928.1_05653.t1 atgaatgaatttaggatgtccttcaatcatttcgacaagaataagacgaggaggttagaacctaaagaatttaaggcttg cttggtcagtcttggatataacatcagagatgatagacagggtgaagctgacttccagaggataatgtctattgttgatc ccaataactccggctacgtaacatttgaagcgttccttgacttcatgacaagagagacagctgatacagacacggcagaa caagtcatgcagtcattcaaaatcctggctggtgataaggtacataataaaagtctactctacatgcagtaa |
|
Protein
| Protein ID | pfu_aug1.0_58928.1_05653.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_58928.1_05653.t1 MNEFRMSFNHFDKNKTRRLEPKEFKACLVSLGYNIRDDRQGEADFQRIMSIVDPNNSGYVTFEAFLDFMTRETADTDTAE QVMQSFKILAGDKVHNKSLLYMQ |
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