Gene
| Gene Model ID | pfu_aug1.0_58930.1_27450 |
|---|---|
| Locus | scaffold58930.1 : 222 ... 11705 : - |
| To GenomeBrowser | scaffold58930.1:222..11705 |
| Genes list of scaffold | scaffold58930.1 |
| Synonym | pfu_aug2.0_21.1_03435 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_58930.1_27450.t1 | 1 | 1 | Glyco_hydro_18 | 30 | 159 | 5.5e-28 | 98.4 | 9.7e-32 | 7.2e-28 | 98.0 |
| pfu_aug1.0_58930.1_27450.t1 | 3 | 1 | PT | 192 | 227 | 3.4e-15 | 55.0 | 1.2e-09 | 8.7e-06 | 24.9 |
| pfu_aug1.0_58930.1_27450.t1 | 3 | 2 | PT | 209 | 243 | 3.4e-15 | 55.0 | 4.9e-12 | 3.7e-08 | 32.5 |
| pfu_aug1.0_58930.1_27450.t1 | 3 | 3 | PT | 221 | 254 | 3.4e-15 | 55.0 | 2.0e-09 | 1.5e-05 | 24.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_58930.1_27450.t1 | gi|92110430|emb|CAI96025.1| | Chit2 protein [Crassostrea gigas] | 9.99995e-41 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 2 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_58930.1_27450.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_58930.1_27450.t1 atgggacgaggaagtgatgcaagtgtcgcatcttatatatatattacccactccttggtcaatcagttttcacttcatat atcaagaaatcaagaattgaaacaaaaatgggcatctgcttactggcaccagttaggattaccaaaggacaagctgatag ttggtctagccacttatgggcgagcctttaccttgtctgatcccaacaattatggtgtaggtgcaccaacagtatcaggt tcagctccgtctggaccttatacgagggagaaaggattcttcgcttattacgagatctgtgagatgcagaacagtggcag tggtacaacctatcgtgatacagaggcgatggtcccatactacgtagatggcacaacatggattggctttgatgatgaaa taagcatccataacaaagttcaaaatttcattatttccaatggctacggaggcgctatggtgtgggcacttcccctggat gattttaaagcaaattgcggctcaaagaaatttcctctgatcaacaaaataaaggagatattcgaagctgacgagaatgg tggttcagtaaatccccctactgcagccccgacagcggcccccacggctgcaccaacagccgctcctacggctgcaccca cagccgctcctacgactgccccgacagccgctccaacggctggtccaacagcggcccccacagctggcccaacagcagct cccacacagggacctacggcgggacctacaggtgctccaacatcccattctcctggcggcaacggtaagttgtttaaaca tttctttcgtcatatgacacaacacaaattggcagcagtgattgctactaaaacataa |
|
Protein
| Protein ID | pfu_aug1.0_58930.1_27450.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_58930.1_27450.t1 MGRGSDASVASYIYITHSLVNQFSLHISRNQELKQKWASAYWHQLGLPKDKLIVGLATYGRAFTLSDPNNYGVGAPTVSG SAPSGPYTREKGFFAYYEICEMQNSGSGTTYRDTEAMVPYYVDGTTWIGFDDEISIHNKVQNFIISNGYGGAMVWALPLD DFKANCGSKKFPLINKIKEIFEADENGGSVNPPTAAPTAAPTAAPTAAPTAAPTAAPTTAPTAAPTAGPTAAPTAGPTAA PTQGPTAGPTGAPTSHSPGGNGKLFKHFFRHMTQHKLAAVIATKT |
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