Gene
| Gene Model ID | pfu_aug1.0_58970.1_48896 |
|---|---|
| Locus | scaffold58970.1 : 1 ... 4006 : + |
| To GenomeBrowser | scaffold58970.1:1..4006 |
| Genes list of scaffold | scaffold58970.1 |
| Synonym | pfu_aug2.0_297.1_23823 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_58970.1_48896.t1 | 6 | 1 | LRR_4 | 183 | 214 | 8.2e-13 | 47.6 | 0.00067 | 2.0 | 8.1 |
| pfu_aug1.0_58970.1_48896.t1 | 5 | 1 | LRR_8 | 200 | 213 | 9.4e-18 | 63.7 | 0.042 | 120.0 | 2.4 |
| pfu_aug1.0_58970.1_48896.t1 | 8 | 1 | LRR_1 | 201 | 217 | 4.7e-09 | 35.0 | 0.11 | 320.0 | 2.0 |
| pfu_aug1.0_58970.1_48896.t1 | 8 | 2 | LRR_1 | 230 | 244 | 4.7e-09 | 35.0 | 0.73 | 2200.0 | -0.5 |
| pfu_aug1.0_58970.1_48896.t1 | 8 | 3 | LRR_1 | 257 | 275 | 4.7e-09 | 35.0 | 0.025 | 73.0 | 4.0 |
| pfu_aug1.0_58970.1_48896.t1 | 5 | 2 | LRR_8 | 258 | 288 | 9.4e-18 | 63.7 | 0.0009 | 2.7 | 7.8 |
| pfu_aug1.0_58970.1_48896.t1 | 6 | 2 | LRR_4 | 258 | 291 | 8.2e-13 | 47.6 | 0.0013 | 3.8 | 7.2 |
| pfu_aug1.0_58970.1_48896.t1 | 6 | 3 | LRR_4 | 277 | 316 | 8.2e-13 | 47.6 | 1.6e-05 | 0.048 | 13.2 |
| pfu_aug1.0_58970.1_48896.t1 | 8 | 4 | LRR_1 | 302 | 320 | 4.7e-09 | 35.0 | 7.1e-05 | 0.21 | 11.7 |
| pfu_aug1.0_58970.1_48896.t1 | 5 | 3 | LRR_8 | 302 | 360 | 9.4e-18 | 63.7 | 7.5e-16 | 2.2e-12 | 46.5 |
| pfu_aug1.0_58970.1_48896.t1 | 8 | 5 | LRR_1 | 326 | 347 | 4.7e-09 | 35.0 | 0.0044 | 13.0 | 6.2 |
| pfu_aug1.0_58970.1_48896.t1 | 6 | 4 | LRR_4 | 326 | 363 | 8.2e-13 | 47.6 | 1.2e-07 | 0.00037 | 20.0 |
| pfu_aug1.0_58970.1_48896.t1 | 8 | 6 | LRR_1 | 349 | 371 | 4.7e-09 | 35.0 | 8.8e-05 | 0.26 | 11.4 |
| pfu_aug1.0_58970.1_48896.t1 | 6 | 5 | LRR_4 | 349 | 387 | 8.2e-13 | 47.6 | 1.3e-06 | 0.0038 | 16.8 |
| pfu_aug1.0_58970.1_48896.t1 | 5 | 4 | LRR_8 | 352 | 392 | 9.4e-18 | 63.7 | 7.2e-08 | 0.00021 | 20.9 |
| pfu_aug1.0_58970.1_48896.t1 | 8 | 7 | LRR_1 | 373 | 392 | 4.7e-09 | 35.0 | 0.0017 | 5.0 | 7.5 |
| pfu_aug1.0_58970.1_48896.t1 | 6 | 6 | LRR_4 | 397 | 433 | 8.2e-13 | 47.6 | 4.8e-06 | 0.014 | 14.9 |
| pfu_aug1.0_58970.1_48896.t1 | 8 | 8 | LRR_1 | 398 | 417 | 4.7e-09 | 35.0 | 0.0014 | 4.2 | 7.7 |
| pfu_aug1.0_58970.1_48896.t1 | 5 | 5 | LRR_8 | 398 | 433 | 9.4e-18 | 63.7 | 0.00039 | 1.2 | 8.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_58970.1_48896.t1 | gi|296224878|ref|XP_002758226.1| | 2.0e-16 |
Transcript
| Transcript ID | pfu_aug1.0_58970.1_48896.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_58970.1_48896.t1 catagacaaatgcatcatgagagaagaacgtttcatgtaccctcctctgtacaaaatggctgacagaacacttccgtcgg tagccattgctttcatactcattccaattgtggaatacgaggattgttacgtagaaatgctggatgttatggaggtctac aatttcgacaattccgtcacaagttttgccgccttttcttttgtttgcattctacccatcaatgtggacttccgctgtag aaatgaaacgctttgtcaacacggagatcgggtaatcggcaacttcgaaatcatgacgtgtaaaacgacactaagaagca ttgactacttctgccgatttttccacgttttgtcgatctatttatacgatatgggattaggaagttcaataagcattaat gaaactttgccgatcactcaaaatttcacatgtgaagggttgaaaaatgtcaatatagtggtcctcgcattgttggaaaa cttcacgtacgacaactttttgtccattttccagtgttatacttttcagcaagtgaacactttagtaatttcagacatac cttgggacatgaaaagtaatgatattattcaaatattcccaaatctacagtccttagaattgcagaatgtcaacattgag tatcctccagatttttttccatggagcaatgagactgtattattaccactaaatctgtcccgtactgagtacctacagaa tctgtatgcttccacattataccttgaaatacctgtcaatgagccaaggcgggtgttcaatcttcgttataactcaatcg caaatatttctgactatcatttttctggaaaattgcatatgatcacattggaaaataatggaataatttctgtagatgct gatctcattcgcgaagtttttgatctccagaaccttgacttgtcaagcaatttcattctggaaatacccaatgggttttt cgacggtcaagatttcttgcgaagcgtaaatttgcgaaagaaccgtatcgctcatcttacatcggaaacttttcaagatc tccacaaacttcagtttttggacttatcattcaacaaacttttgaagttagaatctggcttgttttcatctcttctaaat ttgaaaatacttcgtctggaaaataacttgatacaaactatacagaacaatgtgtttcctatcattagcaaaaacatcga acaactgtttctggacaataacccgttaagggaaattcctgtggatatcttttacatcagcagtttgaaaaagacaagct tacaacacactgaaatttcttttcgaaatttcactggacttttgaaacaaattcacgttaatgttctttctcagaacgtt ctcgcatacgacccagacaaaaaggcagaggaagtcagagaagttgatttgaccggaagtaaagtgaattatttctatat tgacaaggattctttcaatattgatgcaaaacgagctttgattttgctcttaaggtatttcaaatttatacttaaaaata a |
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Protein
| Protein ID | pfu_aug1.0_58970.1_48896.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_58970.1_48896.t1 IDKCIMREERFMYPPLYKMADRTLPSVAIAFILIPIVEYEDCYVEMLDVMEVYNFDNSVTSFAAFSFVCILPINVDFRCR NETLCQHGDRVIGNFEIMTCKTTLRSIDYFCRFFHVLSIYLYDMGLGSSISINETLPITQNFTCEGLKNVNIVVLALLEN FTYDNFLSIFQCYTFQQVNTLVISDIPWDMKSNDIIQIFPNLQSLELQNVNIEYPPDFFPWSNETVLLPLNLSRTEYLQN LYASTLYLEIPVNEPRRVFNLRYNSIANISDYHFSGKLHMITLENNGIISVDADLIREVFDLQNLDLSSNFILEIPNGFF DGQDFLRSVNLRKNRIAHLTSETFQDLHKLQFLDLSFNKLLKLESGLFSSLLNLKILRLENNLIQTIQNNVFPIISKNIE QLFLDNNPLREIPVDIFYISSLKKTSLQHTEISFRNFTGLLKQIHVNVLSQNVLAYDPDKKAEEVREVDLTGSKVNYFYI DKDSFNIDAKRALILLLRYFKFILKN |
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