Gene
| Gene Model ID | pfu_aug1.0_5898.1_09234 |
|---|---|
| Locus | scaffold5898.1 : 1 ... 10087 : + |
| To GenomeBrowser | scaffold5898.1:1..10087 |
| Genes list of scaffold | scaffold5898.1 |
| Synonym | pfu_aug2.0_265.1_17199 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5898.1_09234.t1 | 1 | 1 | Ribosomal_S27e | 33 | 87 | 3.5e-30 | 103.2 | 7.4e-34 | 5.5e-30 | 102.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5898.1_09234.t1 | gi|159145698|gb|ABW90386.1| | putative ribosomal protein S27 [Sipunculus nudus] | 2.0e-38 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 2 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5898.1_09234.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5898.1_09234.t1 atatatcatgtttattttcagctcgctaaagacttgctgcatccctcattagaggaggaaagaggaaagtgtaaactgaa gagacttgtacagagtccaaacagctactttatggatgttaaatgtcctggatgctataagataacgacggtattcagtc atgcacagacagttgtcttatgtgtaggatgttctacagtgctgtgtcaacccacgggaggaaaggctcgattaacggaa ggttgttccttccgtaagaagcaacattaa |
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Protein
| Protein ID | pfu_aug1.0_5898.1_09234.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5898.1_09234.t1 IYHVYFQLAKDLLHPSLEEERGKCKLKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTE GCSFRKKQH |
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