Gene
| Gene Model ID | pfu_aug1.0_5898.1_09235 |
|---|---|
| Locus | scaffold5898.1 : 10498 ... 24365 : - |
| To GenomeBrowser | scaffold5898.1:10498..24365 |
| Genes list of scaffold | scaffold5898.1 |
| Synonym | pfu_aug2.0_265.1_17200 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5898.1_09235.t1 | 1 | 1 | Arf | 14 | 179 | 6.1e-10 | 38.6 | 3.7e-13 | 7.8e-10 | 38.2 |
| pfu_aug1.0_5898.1_09235.t1 | 1 | 1 | Miro | 22 | 136 | 4.5e-15 | 56.1 | 6.0e-18 | 1.3e-14 | 54.7 |
| pfu_aug1.0_5898.1_09235.t1 | 1 | 1 | Ras | 23 | 160 | 8.6e-30 | 103.2 | 5.2e-33 | 1.1e-29 | 102.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5898.1_09235.t1 | gi|229594508|ref|XP_001031389.3| | Rab-family small GTPase [Tetrahymena thermophila SB210] | 9.0e-18 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5898.1_09235.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5898.1_09235.t1 atggggtcgtcacgatccaaacacgacgtacagaagaagactaataaggaacccacagttgttagaatagctctgattgg aacatttgctgttggtaaaacgtcaatcgttacacgttacgttgacggcgagtttagccccgcctatcagtacacaagag gtggtagtcgaagagtaaaatcagtcactatggatgaatcccacacccgtattcaagttatagacactggaggacagcat caccagattaaatgtattcgaccactctatagatttgttgacgggattatcttagtacacgatatctcaaagcctgaaag ttaccacgatgtggatgattggctggtagagatacaaaaccattgtaagtcaaagccactggtgatgttggtgggaaata aaagtgacttagacagcagtattacatatatagatctgaaaggaaagccagtcaaacaagataaagcctgtctccaaatg gatagaattacatatgaagaaattcagcaggtaacctgtcaaattgtcacgaagctcatgatcaaatgtggaccaaatag tttgagtagtgctgcaactgaataa |
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Protein
| Protein ID | pfu_aug1.0_5898.1_09235.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5898.1_09235.t1 MGSSRSKHDVQKKTNKEPTVVRIALIGTFAVGKTSIVTRYVDGEFSPAYQYTRGGSRRVKSVTMDESHTRIQVIDTGGQH HQIKCIRPLYRFVDGIILVHDISKPESYHDVDDWLVEIQNHCKSKPLVMLVGNKSDLDSSITYIDLKGKPVKQDKACLQM DRITYEEIQQVTCQIVTKLMIKCGPNSLSSAATE |
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