Gene
| Gene Model ID | pfu_aug1.0_59.1_43447 |
|---|---|
| Locus | scaffold59.1 : 74996 ... 88268 : + |
| To GenomeBrowser | scaffold59.1:74996..88268 |
| Genes list of scaffold | scaffold59.1 |
| Synonym | pfu_aug2.0_701.1_04490 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_59.1_43447.t1 | 1 | 1 | HHH_5 | 27 | 77 | 7.6e-12 | 45.2 | 4.1e-15 | 7.6e-12 | 45.2 |
| pfu_aug1.0_59.1_43447.t1 | 1 | 1 | Rad51 | 80 | 335 | 0.0 | 474.0 | 0.0 | 0.0 | 473.7 |
| pfu_aug1.0_59.1_43447.t1 | 1 | 1 | AAA_25 | 91 | 265 | 1.4e-14 | 53.9 | 1.1e-17 | 1.9e-14 | 53.4 |
| pfu_aug1.0_59.1_43447.t1 | 1 | 1 | RecA | 91 | 301 | 1.1e-06 | 27.9 | 9.0e-10 | 1.7e-06 | 27.3 |
| pfu_aug1.0_59.1_43447.t1 | 1 | 1 | KaiC | 99 | 268 | 2.6e-06 | 26.7 | 4.5e-09 | 8.4e-06 | 25.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_59.1_43447.t1 | gi|62858453|ref|NP_001016393.1| | DNA repair protein RAD51 homolog 1 [Xenopus (Silurana) tropicalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_59.1_43447.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_59.1_43447.t1 atgcaagcgcgtcaggaagcccagcaagtagaagtggaggatgaaaactttggtccaatgaccattaacaaactggaggc ccatggaatcagtgccactgatgttaagaagctagaagaagcaggatattatacagtagaagctattgcatatgctccaa agaaaagtttacttgccatcaaaggtattagtgaggccaaagctgataaaatattagcagaagctgcaaagttggtaccc atgggttttactacagccacagaattccatcagaaaagatcagagatcattcaagttactactggatctaaagaacttga caaattacttcaaggtggaatagagacaggctctattacagaactatttggtgaatttaggacaggaaaatctcagcttt gtcacacattagcagtcacctgtcaactgccaatagacatgggaggtggggaaggcaaggctatgtacatagatactgaa ggaacatttagaccagaacgcttactagctgtagctgaaagatatggattatcgggaagtgatgtgttagataacgtggc ctatgctagggcgtataatagtgatcatcagtcccagctgttagtacaagctgcagctatgatgtcggagtcaaggtatg ctctgttaattgtggacagtgctacagggttataccgtacagattattcagggagaggagaactctcagccagacaaatg catctcgccaggtttttaaggatgttactaagacttgctgatgagttcggagtggctgttgtaataacaaatcaggtggt ggcccaggtagatggagctgccatgttctctgctgatccaaaaaagccgatcggtggaaatatcattgcccatgcttcca caacaagactgtacctcaggaaagggagaggagagactcgtatttgtaagatctatgattcaccttgcttaccggaggct gaggcaacattcgccattaatactgacggtataggagatgccaaggactga |
|
Protein
| Protein ID | pfu_aug1.0_59.1_43447.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_59.1_43447.t1 MQARQEAQQVEVEDENFGPMTINKLEAHGISATDVKKLEEAGYYTVEAIAYAPKKSLLAIKGISEAKADKILAEAAKLVP MGFTTATEFHQKRSEIIQVTTGSKELDKLLQGGIETGSITELFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKAMYIDTE GTFRPERLLAVAERYGLSGSDVLDNVAYARAYNSDHQSQLLVQAAAMMSESRYALLIVDSATGLYRTDYSGRGELSARQM HLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFSADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA EATFAINTDGIGDAKD |
|