Gene
| Gene Model ID | pfu_aug1.0_59.1_43448 |
|---|---|
| Locus | scaffold59.1 : 94446 ... 113042 : + |
| To GenomeBrowser | scaffold59.1:94446..113042 |
| Genes list of scaffold | scaffold59.1 |
| Synonym | pfu_aug2.0_237.1_23732 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_59.1_43448.t1 | 2 | 1 | AAA_33 | 188 | 212 | 2.8e-26 | 92.0 | 0.31 | 570.0 | 0.3 |
| pfu_aug1.0_59.1_43448.t1 | 1 | 1 | SPRY | 258 | 388 | 2.1e-13 | 50.4 | 2.8e-16 | 5.2e-13 | 49.1 |
| pfu_aug1.0_59.1_43448.t1 | 1 | 1 | Zeta_toxin | 423 | 603 | 7.1e-06 | 25.2 | 3.8e-09 | 7.1e-06 | 25.2 |
| pfu_aug1.0_59.1_43448.t1 | 2 | 2 | AAA_33 | 427 | 572 | 2.8e-26 | 92.0 | 1.1e-28 | 2.0e-25 | 89.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_59.1_43448.t1 | gi|326668186|ref|XP_003198760.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Danio rerio] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_59.1_43448.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_59.1_43448.t1 atgtatggtaaaaggtcctatattcgaacctcaccaaatgaatcaatatccagctcagccgatgattctcaagaagcctc tatgttagatgatagtagtcaagaagcaaacgagtctcaggaagtacaaaaaacagaggaaccagaagctgatccagagc ctgaagctcagcaggaacctgttgatgaagaaaaagttgagcccactgaagctgaaccagatattgaggaaaagtctgcc ccagttgatgatgttaagcctgagcctgaggaagtgaaacaaagtgatgatactccagtaaaatcagaggaggctgctca ggagtcggacgtaaagaaggaggaagaggctccccaggatgacgagatgaaggaggaggtcaaagaagaagaacaagaac ccaaaggaaatggtgatgtggccgctgatgactcggacatggtggctgtagatgtcgctgatgatgatggacatgaaaag cgacatggcaggaaaaggtcaagatccaggtcacatgaaagaaaacatagcagatctaggtcaagggaaagaaggaggtc aaggtcacgggaaagaaggagaagtcccacaccaaagaaaatcgagatggaggatgaagcttgggaaacctcagaaagtg tctgtctagacagattcaactccgacttaacattagcgatagatgagacaaacttagcagccacaccaatgacagaagga ggatttgccatgatgtgggctggagtcagaggctcgtatggagtcaaaaaaggaaaagtagcttttgaagtcaggctgtt ggagaattgtgatgttcaccatcttcctgcggacgaggttcatcagaatgtggccagggtgggctggtcctgtaactcta cctcattacagcttggtgaagaagcaaaatcgtttggatatggtggaacggctaaggcagctacagaatgtaaatttgaa gattacggccaggtctttggtgcaggagatgtcattacttcttatgtagattttgagatggatgagaacgaggtatacat atcgtttgccaagaacggagatgatttaggtatctgcttccctatagagaaatccaaactagatggagaggcattgttcc ctcatatcctcacaaaaaatatatcgttcgatgttaactttggatcatgggaggagccatacttcccactcaaagatgat tttgtatggatagagaaggttccagtagaggacagagaaagaggcacagctcctcccgccaagaaagaggagtgtgagat gatgatgatggttggattaccaggggctggaaagacaacttggtcggaaaaacacaaggcttccaatcctgataaaatgt tctacattttaggaactaatcttattattgacaaaatgaaggtgatgggactacccaggaagaagaactatgctggtaga tgggatgtccttatagacaaggccaccaagtgcctaaataaattactggagacggcggctagcaagaaaagaaattatat cctggatcagacaaatgtgtacgcatcagccaggagacgtaaaatgcagccttttgaaggttttcaacgcaaggcagttg tcattgtaccaagtgatgaagaatttcaaaagcgcgttgaaaacagagaaaaagaggaaggaaaggaggttcctgaacgt gctgtacttgaaatgaaagctaactttacattacctgaggagggccctctgtttgactctatagaatttgtggaattggc caaggaggaggcaacagagctgatagagaaatataataaggaaggaaaggacaacctacccccaccggagaaaaggtcaa gatggggagaagtggtggctggaaccagcgagataacagacatggtggtggtggcggcggtggcagatacgggggtggtg gtgacagaagaggaggtggtggaggatggggtgaccgcagtggaggcggtggcaatagatggggtggtggcggcggcggt ggtggtagagatagatatgatagaagtggtggtggcggtaaccgctggggaggcggtggtagcggcggtggtggtagtag atggggaggtggtggaggaggaggcagacagggaaatgatcgtagacaaggaggaggtggtggatggaatcaaggaggta gaaatgatcgtaggagtggaggaggtggaggcagcagtggtcgttggagtgataaccgtagtggtggtagcggcggtggt ggtaaatggtcgagcggcggtagcagtggtggtggtggtggtaacaggtcgttggggagtggacagaccagccagtatgg ctcacagggatcgtggggcgatcagagtggctggggatctcaacaaaactgggggtctcagcagggaagctggggaaacc agggaaactggaataatcagaattaccagaattggggttatggtactagtggccagtctaataatcagcagtcctggaac caatcctatcaacagtggccgcagcaatacactactaaccaacagtaccaacaatggtatgggtcctacaaccaatcctc cactcaaccgcagcagtctcagcagaaataaacacggcagcttaaatctactgtatatgacatgccaatctataaatata ttgacctga |
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Protein
| Protein ID | pfu_aug1.0_59.1_43448.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_59.1_43448.t1 MYGKRSYIRTSPNESISSSADDSQEASMLDDSSQEANESQEVQKTEEPEADPEPEAQQEPVDEEKVEPTEAEPDIEEKSA PVDDVKPEPEEVKQSDDTPVKSEEAAQESDVKKEEEAPQDDEMKEEVKEEEQEPKGNGDVAADDSDMVAVDVADDDGHEK RHGRKRSRSRSHERKHSRSRSRERRRSRSRERRRSPTPKKIEMEDEAWETSESVCLDRFNSDLTLAIDETNLAATPMTEG GFAMMWAGVRGSYGVKKGKVAFEVRLLENCDVHHLPADEVHQNVARVGWSCNSTSLQLGEEAKSFGYGGTAKAATECKFE DYGQVFGAGDVITSYVDFEMDENEVYISFAKNGDDLGICFPIEKSKLDGEALFPHILTKNISFDVNFGSWEEPYFPLKDD FVWIEKVPVEDRERGTAPPAKKEECEMMMMVGLPGAGKTTWSEKHKASNPDKMFYILGTNLIIDKMKVMGLPRKKNYAGR WDVLIDKATKCLNKLLETAASKKRNYILDQTNVYASARRRKMQPFEGFQRKAVVIVPSDEEFQKRVENREKEEGKEVPER AVLEMKANFTLPEEGPLFDSIEFVELAKEEATELIEKYNKEGKDNLPPPEKRSRWGEVVAGTSEITDMVVVAAVADTGVV VTEEEVVEDGVTAVEAVAIDGVVAAAVVVEIDMIEVVVAVTAGEAVVAAVVVVDGEVVEEEADREMIVDKEEVVDGIKEV EMIVGVEEVEAAVVVGVITVVVVAAVVVNGRAAVAVVVVVVTGRWGVDRPASMAHRDRGAIRVAGDLNKTGGLSREAGET RETGIIRITRIGVMVLVASLIISSPGTNPINSGRSNTLLTNSTNNGMGPTTNPPLNRSSLSRNKHGSLNLLYMTCQSINI LT |
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