Gene
| Gene Model ID | pfu_aug1.0_5916.1_31072 |
|---|---|
| Locus | scaffold5916.1 : 16378 ... 32054 : - |
| To GenomeBrowser | scaffold5916.1:16378..32054 |
| Genes list of scaffold | scaffold5916.1 |
| Synonym | pfu_aug2.0_1017.1_24610 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5916.1_31072.t1 | 1 | 1 | AAA | 127 | 187 | 2.3e-14 | 53.7 | 7.2e-17 | 3.7e-14 | 53.0 |
| pfu_aug1.0_5916.1_31072.t1 | 1 | 1 | Vps4_C | 256 | 305 | 1.9e-06 | 27.6 | 1.1e-08 | 5.5e-06 | 26.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5916.1_31072.t1 | gi|291238538|ref|XP_002739185.1| | PREDICTED: vacuolar protein sorting-associated protein 4-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_5916.1_31072.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5916.1_31072.t1 ttatgaaaattcctgatttttttcgtaagaacttttgtgaaactgggcactgcttcttaaagggcatactgtgtcacctg gagtcggctctacattcccaaaagtctttgctgaaatccaaaatagatcaactcaacgaacaatctcatactcagacgga caaacagaatggatccacaaaacaagagaaaataccagtagctgatgcccaatgtcaaaaccgacgatcagctatagagg ataccattataactaagggaggtttgactttttctgacgttgctggactggaggacgccaaacagacactaagggaggct atcatcatgccgttacaattcccacaactcttcacaggagctgtaaagccatggaagcggatcctcttatacggaccccc ggggacgggaaagtcccgcctagctcaagccatatcatcggaaatacagtccactttctattgtgtgtctagctcggacc ttgtttcatcatgggtcggcgaaagtgaaaagttaattaaagaattgttccaccatgcagtcagtcagaaaggcagatca gatgacagagtgaccttgaccgaggaggagtggtcacgcctgggtgacgagactaagggattctctggcagcgacatcgc taacatgatactggatgccttgttctgtcctatcagagatatacagaagtcaacaaaatgggtaaagaggcctgatggga tgtttagtccgtgtttgtcggacaataactccagtacagagtatctaattactgctaccatagcagacctgcctccagac aagatctcacccagagatgctgtcctaggagactttatggcttctctagcgactcacaaatgtaccgtcacagccgcgga actggagaagtttgaagagtttacaaaggccatgggagtacgaggatag |
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Protein
| Protein ID | pfu_aug1.0_5916.1_31072.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5916.1_31072.t1 MKIPDFFRKNFCETGHCFLKGILCHLESALHSQKSLLKSKIDQLNEQSHTQTDKQNGSTKQEKIPVADAQCQNRRSAIED TIITKGGLTFSDVAGLEDAKQTLREAIIMPLQFPQLFTGAVKPWKRILLYGPPGTGKSRLAQAISSEIQSTFYCVSSSDL VSSWVGESEKLIKELFHHAVSQKGRSDDRVTLTEEEWSRLGDETKGFSGSDIANMILDALFCPIRDIQKSTKWVKRPDGM FSPCLSDNNSSTEYLITATIADLPPDKISPRDAVLGDFMASLATHKCTVTAAELEKFEEFTKAMGVRG |
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