Gene
| Gene Model ID | pfu_aug1.0_5941.1_02106 |
|---|---|
| Locus | scaffold5941.1 : 23856 ... 39605 : + |
| To GenomeBrowser | scaffold5941.1:23856..39605 |
| Genes list of scaffold | scaffold5941.1 |
| Synonym | pfu_aug2.0_3232.1_09083 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5941.1_02106.t1 | 1 | 1 | zf-C3HC4 | 16 | 59 | 2.7e-08 | 33.3 | 1.3e-11 | 2.7e-08 | 33.3 |
| pfu_aug1.0_5941.1_02106.t1 | 3 | 1 | zf-C3HC4_2 | 16 | 59 | 1.8e-07 | 31.0 | 8.5e-11 | 1.8e-07 | 31.0 |
| pfu_aug1.0_5941.1_02106.t1 | 2 | 1 | zf-C3HC4_4 | 16 | 59 | 5.5e-07 | 29.3 | 2.6e-10 | 5.5e-07 | 29.3 |
| pfu_aug1.0_5941.1_02106.t1 | 1 | 1 | zf-RING_UBOX | 16 | 57 | 5.9e-06 | 25.9 | 2.8e-09 | 5.9e-06 | 25.9 |
| pfu_aug1.0_5941.1_02106.t1 | 6 | 1 | zf-B_box | 31 | 40 | 6.2e-29 | 99.6 | 0.51 | 1100.0 | -0.4 |
| pfu_aug1.0_5941.1_02106.t1 | 6 | 2 | zf-B_box | 96 | 140 | 6.2e-29 | 99.6 | 7.4e-05 | 0.16 | 11.9 |
| pfu_aug1.0_5941.1_02106.t1 | 3 | 2 | zf-C3HC4_2 | 98 | 129 | 1.8e-07 | 31.0 | 0.023 | 49.0 | 4.0 |
| pfu_aug1.0_5941.1_02106.t1 | 6 | 3 | zf-B_box | 158 | 198 | 6.2e-29 | 99.6 | 1.1e-13 | 2.3e-10 | 40.1 |
| pfu_aug1.0_5941.1_02106.t1 | 6 | 4 | zf-B_box | 508 | 552 | 6.2e-29 | 99.6 | 3.8e-05 | 0.08 | 12.8 |
| pfu_aug1.0_5941.1_02106.t1 | 3 | 3 | zf-C3HC4_2 | 525 | 542 | 1.8e-07 | 31.0 | 0.061 | 130.0 | 2.7 |
| pfu_aug1.0_5941.1_02106.t1 | 2 | 2 | zf-C3HC4_4 | 527 | 539 | 5.5e-07 | 29.3 | 0.37 | 790.0 | 0.0 |
| pfu_aug1.0_5941.1_02106.t1 | 6 | 5 | zf-B_box | 570 | 610 | 6.2e-29 | 99.6 | 6.8e-13 | 1.4e-09 | 37.6 |
| pfu_aug1.0_5941.1_02106.t1 | 6 | 6 | zf-B_box | 1056 | 1096 | 6.2e-29 | 99.6 | 4.3e-12 | 9.2e-09 | 35.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5941.1_02106.t1 | gi|344289795|ref|XP_003416626.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM56 [Loxodonta africana] | 5.04467e-44 |
Transcript
| Transcript ID | pfu_aug1.0_5941.1_02106.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5941.1_02106.t1 atggctgagtcagccccatcaaagcttaacgatgagttcctcacttgtaccatttgtatggaaatctacagggagccaaa gattttatcttgcctgcactctttctgcaagaactgcatagaaaagagttgggaaggaagcaacaacaataaaaagcatg tatcctgtccacattgtcaagaaataactttattacatgaagatggaattcatggattgaagaacaattttttcattcaa aatttgattatgttcaatgaatcaacttcagcaaagtatggagaaagaaactgttcatattgcgtattactgcaaaagaa gaatccagctcatggaaaatgtctcacctgtggcgatttcctttgttcagagtgtttcggcagacacacattcacaacgg aaacattcaaccatgagattgcaacactacaagatcttcatagtggtaaatataataaaaaattaagatcgagccaagaa attccatgtaaggaacataaaaaggaattccttcgttatttctgtgacacgtgcgatgttcccgtatgccgcgattgcgt tattctgaatcaccgacaagaccattccatagttcagccataccaggcattggagaaaaaacgacaagagttaggcaaac tgatggaaggattggataataaaatgacggatatcatagcaaatgttgaaatgttcaatcgagaagaatgcaagctaatg gaaacacaaagacaaatctcggacactatgcaagaaactatcaatattatagtgaaaaaacttcagtcggagaaaagagg gaaacaaaaacttatgcaagcctacgtagattctagaaaagaggaacttgcaaagagaaaagaagaacaagacgtcaaaa tacagcttctggggaaatctatggaattttgccgaagagtcattgacaatggtatggagggcgagatcgtattccttcaa gacattatgagggaaagactttcacgcttagacgcatgtgtccatgatatcgagatatatgagccattagcacctccatc tttgtcaatctctgaaatgggagagaaaaattcagctttgggtttattcaaaatagaatttgcaacgaaaaaatcagata cggtttcatgcgtacgcgatgaaaagtcgagaaatcgacccgaagataagaggagcttgctctgttcaaaaacatctaaa aaagacgatatctccattaaaaacttagatacacataatggtagttcgtcagattgtgtatctgttacaaaaagggatag gaaaaatgcaaataaggaccagtgctcccacttaaaaagcgaaggtgcaccaaatatgccctaccttcgtcttgagtgtt tcatagactgcaaactttttggagatgtttgcaaaccgaaattatcgtctgtagcctggcttaatgaacaaacattcatt gtagcggatgaatctaatgaaaaattaaaacagtactatataacagacttcagtgaatcaacatcagctcagttcacaaa caaaaactgctcattctgtgcgctgatgaagaaaaggattcctgcacttggcaagtgtctgacatgcggagacttccttt gccccgaatgttaccagcgacataagtttacaactaaaacctttcaacacgaaactgcaacacttgaagacttgcaaagt ggaaaatacaatgaaaaactaaggctaaatcaagaaattccatgtgaagaacatagaaatactctccggtatttctgtga tacctgcaatgtcccagtatgtccagactgtgccatcctcgaccacagagaaggacacgtcatagtcaagccatcagaag caatagcgaaaaggcagcaagaaattggcagcttgttggagggtttagacaagaaaatgactgatttcaaacaaaaaagc tcccttctagaagaagaggaacgaaagatcgataccactcaacgagacatgtcgcaacttattcgagaaacaatcgacaa tctggtgaagaaaattttagcagaaggtcaaaaggcacaagaaacattacaaacgcacatcaacgctagaagacaggcat taatccaagtaagatcagagcaaggggaaaatattgcacttctgcaaaactctctggagttttgtcaaagagtaataagt aatggaatggaaggggaaatagtattccttcaggaaatgattcgtaaaagactttctttcctagaaactaaagtctttga caagaatgaaattaagtcatgggcaccaccatcactacaaataagtaaattagcagacgacatctcctctttcaaattat tcaaatttgaagaagaatctctccatatcagtcaagaagtaaagcaatctgatagttgcaaagaggcaaagaaaattcca aaaatagctacatccgttccgaaatcccatgccatttcttgtgcaaatctggcagaggctgttgccaatgaacaaaagaa tattggagagacgagcggacaagcaccatgtgttttaaaacttcatcgtaaatgtattatagactgcactgttgatgacg atgaatgcgagccacagataacctctgtagactggtttgatgaccaatcgtttgttgtatcagacgaagcaaacgaaaaa attaaaaagtacaataccaatggcaaacttttgaagtcccaaaaagtgaagagtgtacaaacagttgcttgtgtgcgtaa tacggtgttctgcggactcaataacggtcaaatcaaaatgatcacaacaaactgtaatgaactcaacgtggaaacacaga aatatggtttctgtgttccagttgccataggaaatgcggaacgaaatgcattactccttggcggttccagttttcaaata gtggatgaatcgggaaatatttcaaagtccgtcccttttagagataaagccggcacacagatgaaaatgaaaccgattcg tccacatcgttttcgggagaatgacgtaattgtttcagactggtccactcattcgtcatacattatcagagaaaacggcc tcacaacgaccattcaaatgaacgagtgtttcgacagacacacattcacaacggaaacattcaaccatgagactgcaaca acacaagatcttcatagtggtaaatataatgaaaaattaagatcgagccaagaaattccatgtcaggaacataaaaatga attccttcattatttctgtgacacatgcgatgttcccgtatgccgcgattgtgagattctgaatcaccgacaagaccatt ccatagttcagccatgccaggcattggagaaaaaacgacaagagttaggcaaactgatggaaggattggatcataaaatg agtaagatcaaagcaaacgttgaactattgaatgaagaggaatgcaagctaatggaaacacaaagacaactctcggacac tatgcaagaaactatcaatatgatagtgaaaaaacttcagtcggagaaaagagggaaacaaaaacttatgcaagcctacg tagattctagaaaagaagaacttgcaaagagaaaagaagaacaagacgtgaaaatacagcttctggggaaatctatggaa ttttgccgaagagtcattgacaatggtatagagggcgagatcgtattcctccaggacgttatgagggaaagactatcacg cttagacgcgtgtgtccatgatatcgatatatatgagccattagcacctccatctttgtcaatctctgaaattggagaga aaatttcacctttgggtatatttagaattgaattttcaacgaaaaaatcagctatggtttcatgtttacgcgatgaaaac tcgagagttcgatccgaagatgaaaggagcttgctctgtccaaatatctctaaaaaagacgagatttccattcaaaactt cgatagtacacatattggtaattcgtcagattgtgtatctattacaaaagaggataggaaaactgcaaataaagaccagt gctcccacttaaaaagtgaaggagcaccaaatacgccctaccttcgtctggagtgtttcacagactgtaaactttttgga gatgttcgtaaaccgaaattatcatctgtagcctggcttaatgaacaaacattcattgcagcggatgaatctaatgaaaa attaaaacaatactgcattacaggaaaacttttgaatttgattgtgatgggaaacatattaacagtcacatatgccaatg agattatttattgtggactcaaacgtgatgaaatgaaacttctcaatgcaaatttttag |
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Protein
| Protein ID | pfu_aug1.0_5941.1_02106.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5941.1_02106.t1 MAESAPSKLNDEFLTCTICMEIYREPKILSCLHSFCKNCIEKSWEGSNNNKKHVSCPHCQEITLLHEDGIHGLKNNFFIQ NLIMFNESTSAKYGERNCSYCVLLQKKNPAHGKCLTCGDFLCSECFGRHTFTTETFNHEIATLQDLHSGKYNKKLRSSQE IPCKEHKKEFLRYFCDTCDVPVCRDCVILNHRQDHSIVQPYQALEKKRQELGKLMEGLDNKMTDIIANVEMFNREECKLM ETQRQISDTMQETINIIVKKLQSEKRGKQKLMQAYVDSRKEELAKRKEEQDVKIQLLGKSMEFCRRVIDNGMEGEIVFLQ DIMRERLSRLDACVHDIEIYEPLAPPSLSISEMGEKNSALGLFKIEFATKKSDTVSCVRDEKSRNRPEDKRSLLCSKTSK KDDISIKNLDTHNGSSSDCVSVTKRDRKNANKDQCSHLKSEGAPNMPYLRLECFIDCKLFGDVCKPKLSSVAWLNEQTFI VADESNEKLKQYYITDFSESTSAQFTNKNCSFCALMKKRIPALGKCLTCGDFLCPECYQRHKFTTKTFQHETATLEDLQS GKYNEKLRLNQEIPCEEHRNTLRYFCDTCNVPVCPDCAILDHREGHVIVKPSEAIAKRQQEIGSLLEGLDKKMTDFKQKS SLLEEEERKIDTTQRDMSQLIRETIDNLVKKILAEGQKAQETLQTHINARRQALIQVRSEQGENIALLQNSLEFCQRVIS NGMEGEIVFLQEMIRKRLSFLETKVFDKNEIKSWAPPSLQISKLADDISSFKLFKFEEESLHISQEVKQSDSCKEAKKIP KIATSVPKSHAISCANLAEAVANEQKNIGETSGQAPCVLKLHRKCIIDCTVDDDECEPQITSVDWFDDQSFVVSDEANEK IKKYNTNGKLLKSQKVKSVQTVACVRNTVFCGLNNGQIKMITTNCNELNVETQKYGFCVPVAIGNAERNALLLGGSSFQI VDESGNISKSVPFRDKAGTQMKMKPIRPHRFRENDVIVSDWSTHSSYIIRENGLTTTIQMNECFDRHTFTTETFNHETAT TQDLHSGKYNEKLRSSQEIPCQEHKNEFLHYFCDTCDVPVCRDCEILNHRQDHSIVQPCQALEKKRQELGKLMEGLDHKM SKIKANVELLNEEECKLMETQRQLSDTMQETINMIVKKLQSEKRGKQKLMQAYVDSRKEELAKRKEEQDVKIQLLGKSME FCRRVIDNGIEGEIVFLQDVMRERLSRLDACVHDIDIYEPLAPPSLSISEIGEKISPLGIFRIEFSTKKSAMVSCLRDEN SRVRSEDERSLLCPNISKKDEISIQNFDSTHIGNSSDCVSITKEDRKTANKDQCSHLKSEGAPNTPYLRLECFTDCKLFG DVRKPKLSSVAWLNEQTFIAADESNEKLKQYCITGKLLNLIVMGNILTVTYANEIIYCGLKRDEMKLLNANF |
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