Gene
| Gene Model ID | pfu_aug1.0_5945.1_16797 |
|---|---|
| Locus | scaffold5945.1 : 48619 ... 59165 : - |
| To GenomeBrowser | scaffold5945.1:48619..59165 |
| Genes list of scaffold | scaffold5945.1 |
| Synonym | pfu_aug2.0_259.1_30529 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_5945.1_16797.t1 | 2 | 1 | Syndecan | 29 | 43 | 3.2e-29 | 100.3 | 0.44 | 1600.0 | -1.2 |
| pfu_aug1.0_5945.1_16797.t1 | 2 | 1 | Thyroglobulin_1 | 34 | 78 | 5.0e-20 | 70.6 | 5.0e-14 | 1.9e-10 | 39.9 |
| pfu_aug1.0_5945.1_16797.t1 | 2 | 2 | Thyroglobulin_1 | 94 | 140 | 5.0e-20 | 70.6 | 1.2e-12 | 4.6e-09 | 35.5 |
| pfu_aug1.0_5945.1_16797.t1 | 2 | 2 | Syndecan | 254 | 314 | 3.2e-29 | 100.3 | 3.2e-32 | 1.2e-28 | 98.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_5945.1_16797.t1 | gi|346465929|gb|AEO32809.1| | 1.0e-21 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_5945.1_16797.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5945.1_16797.t1 atgttacgatttgttactactggcccatttcaacaagagctacgggacttgataattggaattactttgtgcaccaattt tcgattgttacttttgatggactgtcataagaaagataccggagagtttcagagagtgcagtgtcacattaacctgaaag agtgttggtgtgtggacaagactggcacagagatcacagggtcaaggatgagacagccaaaaatgccagattgtatgact ggatctggtttgaagccatgtgtcttccagcttttgagatcaaaataccaaaccatgttaggtaaatttgaaccaagatg tactttcgagggagactttgagaaaatacagtgttttggctcagcttgttggtgtgtagacgaagagggaatagagcagt ggaatactaaagtttacaagcctgccgtcccatcatgtaaagaaataacaccaaaaccaatccctgagaccaaagcacca gagacggaggctcccgttagagttacagaattaccatacataccgatcgacaagacgaaagtgcctcatcatcatgatca taaaccagatagaaacaagcctttcattccaattgatgaagaagatgacactaaagatgataaaaatgatgacgttattg acaaagttgatcctggtagagaagacaatactcccgatgatgataataatagtgatgacatagatacacaagtaaacgga ccagcgggccagaaatcatccaaggatcctattgtatatataatgtcacaaccagggttattagcagctgttatcggtgg agcagtcgtgggtttactatgcgccatcttacttgttatgttcatagtatacagaatgcgcaaaaaagatgaaggaagtt acccactagaagaacaaaaatacacgaactattcatacatgaaggcaccagacaaagaattttacgcataa |
|
Protein
| Protein ID | pfu_aug1.0_5945.1_16797.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_5945.1_16797.t1 MLRFVTTGPFQQELRDLIIGITLCTNFRLLLLMDCHKKDTGEFQRVQCHINLKECWCVDKTGTEITGSRMRQPKMPDCMT GSGLKPCVFQLLRSKYQTMLGKFEPRCTFEGDFEKIQCFGSACWCVDEEGIEQWNTKVYKPAVPSCKEITPKPIPETKAP ETEAPVRVTELPYIPIDKTKVPHHHDHKPDRNKPFIPIDEEDDTKDDKNDDVIDKVDPGREDNTPDDDNNSDDIDTQVNG PAGQKSSKDPIVYIMSQPGLLAAVIGGAVVGLLCAILLVMFIVYRMRKKDEGSYPLEEQKYTNYSYMKAPDKEFYA |
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